View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_167 (Length: 248)
Name: NF20633_low_167
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_167 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 29025210 - 29024995
Alignment:
| Q |
18 |
aataggatgtactcttgtatacttgtacgtacaagaatttaaattaannnnnnnnnnnnatttcaaaaatactttaagaaaatacaatattgtacgacaa |
117 |
Q |
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| T |
29025210 |
aataggatgtactcttgtatacttgtacgtacaagaacttaaatt----ttttttttttatttcaaaaatactttaagaaaatacaatattgtacgacaa |
29025115 |
T |
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| Q |
118 |
tggcataaacccgatgagatacatatgagatgatatcggatctctagacttctaacatatataaagtaaaaaagaaagaaagtcgtttcattaatcttct |
217 |
Q |
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| T |
29025114 |
tagcataaatcggatgagatacatatgagatgatatcgggtctctagacttctaacatttataaagtaaaaaagaaagaaagtcgtttcattaatcttct |
29025015 |
T |
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| Q |
218 |
caattgctcacatgtccttt |
237 |
Q |
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|||||||||||||||||||| |
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| T |
29025014 |
caattgctcacatgtccttt |
29024995 |
T |
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