View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_174 (Length: 245)
Name: NF20633_low_174
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_174 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 51486948 - 51487185
Alignment:
| Q |
1 |
ttataaggatacaaaactcttaatcctaatagaatagagaaacaaatcgtgagaatagcaaagtaatatgtaaactaatccgtgtcaacagttgcttatt |
100 |
Q |
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| T |
51486948 |
ttataaggatacaaaactcttaatcctaatagaatagagaaacaaatcgtgagaatagcaaagtaatatgtaaactaatccgtgtcaacagttgcttatt |
51487047 |
T |
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| Q |
101 |
ttgggatttatgtattcttttcctgattgttgctgtttctttggtaacaggtgaagaaaatgactatatatgctatgtttgatgtggttaacaaattgga |
200 |
Q |
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| T |
51487048 |
--gggatttatgtattcttttcctgattgttgctgtttctttggtaacaggtgaagaaaatgactatatatgctatgcttgatgtggttaacaaattgga |
51487145 |
T |
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| Q |
201 |
gaaaacaaaggttactgattgcaaacttcctctccctttg |
240 |
Q |
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| T |
51487146 |
gaaaacaaaggttactgattgcaaacttcctctccctttg |
51487185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 30199411 - 30199324
Alignment:
| Q |
140 |
tttggtaacaggtgaagaaaatgactatatatgctatgtttgatgtggttaacaaattggagaaaacaaaggttactgattgcaaactt |
228 |
Q |
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| T |
30199411 |
tttggtaaaaggtgaagaaaatgattatatatgctatggttgatttggtcaagaagttggagaaagc-aaggttagtaattgcaaactt |
30199324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 51507607 - 51507705
Alignment:
| Q |
130 |
ttgctgtttctttggtaacaggtgaagaaaatgactatatatgctatgtttgatgtggttaacaaattggagaaaacaaaggttactgattgcaaacttc |
229 |
Q |
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| T |
51507607 |
ttgctgcttctttggtcaaaggtgaagaaaatgattatatatgctatgcttgaactggtggagaagttggagaaagc-aaggttagtggttgcaaacttc |
51507705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 51464030 - 51464117
Alignment:
| Q |
141 |
ttggtaacaggtgaagaaaatgactatatatgctatgtttgatgtggttaacaaattggagaaaacaaaggttactgattgcaaacttc |
229 |
Q |
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| T |
51464030 |
ttggtaccaggtgaagaaaattgccgtacatgctatgcttgatgtggttgaaaaattagagaaagc-aaggttagtgattgcaaacttc |
51464117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 30648817 - 30648743
Alignment:
| Q |
130 |
ttgctgtttctttggtaacaggtgaagaaaatgactatatatgctatgtttgatgtggttaacaaattggagaaa |
204 |
Q |
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| T |
30648817 |
ttgctgcttctttggtgacaggtgaagaaaatgattatttacactatggtttatgtggttaaaacattggagaaa |
30648743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 20865074 - 20865031
Alignment:
| Q |
145 |
taacaggtgaagaaaatgactatatatgctatgtttgatgtggt |
188 |
Q |
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| T |
20865074 |
taacaggtgaagaaaatgattatacatgctatgcttgatgtggt |
20865031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 27401835 - 27401909
Alignment:
| Q |
130 |
ttgctgtttctttggtaacaggtgaagaaaatgactatatatgctatgtttgatgtggttaacaaattggagaaa |
204 |
Q |
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| T |
27401835 |
ttgctgcttcttttgtaacaggtgaagaaaatgatcgtatatactatgatcgatgtggtcaaaaagttggagaaa |
27401909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 5179410 - 5179468
Alignment:
| Q |
130 |
ttgctgtttctttggtaacaggtgaagaaaatgactatatatgctatgtttgatgtggt |
188 |
Q |
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| T |
5179410 |
ttgctgcttctttggtgacaggtgaagaaaatgattatatacactatggttgatgtggt |
5179468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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