View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_177 (Length: 243)

Name: NF20633_low_177
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_177
NF20633_low_177
[»] chr5 (5 HSPs)
chr5 (5-175)||(17068753-17068922)
chr5 (198-235)||(1257153-1257190)
chr5 (200-236)||(12611036-12611072)
chr5 (192-240)||(17068693-17068741)
chr5 (200-240)||(31708147-31708187)
[»] chr2 (4 HSPs)
chr2 (196-240)||(29133481-29133525)
chr2 (194-240)||(10560331-10560377)
chr2 (196-238)||(25274826-25274868)
chr2 (196-237)||(42475107-42475148)
[»] chr3 (3 HSPs)
chr3 (189-240)||(28244094-28244145)
chr3 (196-240)||(52575967-52576011)
chr3 (201-238)||(19939043-19939080)
[»] chr8 (9 HSPs)
chr8 (201-240)||(26885640-26885679)
chr8 (198-240)||(1764953-1764995)
chr8 (196-238)||(4756967-4757009)
chr8 (199-236)||(26886042-26886079)
chr8 (199-236)||(44293599-44293636)
chr8 (200-236)||(15188923-15188959)
chr8 (196-236)||(30623317-30623357)
chr8 (188-236)||(39076544-39076592)
chr8 (188-236)||(39077030-39077078)
[»] chr6 (2 HSPs)
chr6 (194-240)||(9111067-9111113)
chr6 (198-238)||(12808891-12808931)
[»] chr1 (4 HSPs)
chr1 (198-236)||(29233973-29234011)
chr1 (196-240)||(11410647-11410691)
chr1 (196-240)||(37050949-37050993)
chr1 (196-236)||(40227853-40227893)
[»] scaffold0259 (1 HSPs)
scaffold0259 (196-236)||(5437-5477)
[»] scaffold0050 (1 HSPs)
scaffold0050 (196-236)||(53377-53417)
[»] chr7 (1 HSPs)
chr7 (196-236)||(580923-580963)
[»] chr4 (5 HSPs)
chr4 (200-236)||(10303512-10303548)
chr4 (200-236)||(12671749-12671785)
chr4 (196-236)||(32180854-32180894)
chr4 (196-236)||(47806253-47806293)
chr4 (196-236)||(56564980-56565020)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 17068922 - 17068753
Alignment:
Q  5 aatcgaagcaatgacttaattatttacttattgctttctgcataatatgaaaattgcaaagttagtgaacctagacgaaacatgggccaaaagggaatta 104  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17068922 aatcgaagcaatgacttaattatt-acttattgctttctgcataatatgaaaattgcaaagttagtgaacctagacgaaacatgggccaaaagtgaatta 17068824  T
Q  105 gtagcacgagaatatgataaaaacatccgatatcaaagccacgttctattatactatgttttgccatgtct 175  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||    
T  17068823 gtagcacgagaatatgataaaaacatccgatatcaaagccacattctattacactatgttttgctatgtct 17068753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 1257153 - 1257190
Alignment:
Q  198 ggggttcgaaccccagatctttcatattttatgcattg 235  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  1257153 ggggttcgaaccccagaccttacatattttatgcattg 1257190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 12611036 - 12611072
Alignment:
Q  200 ggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  12611036 ggttcgaaccccagaccttgcatattttatgcattgt 12611072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 17068741 - 17068693
Alignment:
Q  192 gagatcggggttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    ||||| || |||||||||||| |||||| |||||||||| |||||||||    
T  17068741 gagattggagttcgaaccccaaatcttttatattttatgtattgttcat 17068693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 31708147 - 31708187
Alignment:
Q  200 ggttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    ||||||||||||||| ||| ||||| |||||||||||||||    
T  31708147 ggttcgaaccccagaccttgcatatattatgcattgttcat 31708187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 29133481 - 29133525
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  29133481 tcggggttcgaaccctagatcttgcatattttatgcattgttcat 29133525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 10560331 - 10560377
Alignment:
Q  194 gatcggggttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    |||||||||||||||||| || ||| |||||||||| ||||||||||    
T  10560331 gatcggggttcgaacccctgaccttgcatattttatacattgttcat 10560377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 25274826 - 25274868
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgttc 238  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||    
T  25274826 tcggggttcgaaccccagaccttacatatattatgcattgttc 25274868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 42475107 - 42475148
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgtt 237  Q
    |||||||||||||| |||| ||| ||||||||||||||||||    
T  42475107 tcggggttcgaacctcagaccttgcatattttatgcattgtt 42475148  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 28244094 - 28244145
Alignment:
Q  189 gtggagatcggggttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    |||| |||||||||||||||||| || ||| |||||||||||||||||||||    
T  28244094 gtggtgatcggggttcgaaccccggaccttgcatattttatgcattgttcat 28244145  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 52576011 - 52575967
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    ||||| ||||||||||||| ||| |||||||||||||||||||||    
T  52576011 tcgggattcgaaccccagaccttgcatattttatgcattgttcat 52575967  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 19939043 - 19939080
Alignment:
Q  201 gttcgaaccccagatctttcatattttatgcattgttc 238  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  19939043 gttcgaaccccagacctttcatatattatgcattgttc 19939080  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 26885640 - 26885679
Alignment:
Q  201 gttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  26885640 gttcgaaccccggatcttacatattttatgcattgttcat 26885679  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 1764953 - 1764995
Alignment:
Q  198 ggggttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    |||||||||||||| |||||| |||||||||||| ||||||||    
T  1764953 ggggttcgaaccccggatcttgcatattttatgcgttgttcat 1764995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 4756967 - 4757009
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgttc 238  Q
    ||||||||||||||| |||| || |||||||||||||||||||    
T  4756967 tcggggttcgaacccaagatattgcatattttatgcattgttc 4757009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 26886042 - 26886079
Alignment:
Q  199 gggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  26886042 gggttcgaaccccggatcttacatattttatgcattgt 26886079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 44293636 - 44293599
Alignment:
Q  199 gggttcgaaccccagatctttcatattttatgcattgt 236  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  44293636 gggttcgaaccccagatcttacatatattatgcattgt 44293599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 15188959 - 15188923
Alignment:
Q  200 ggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  15188959 ggttcgaaccccagatcttacatatattatgcattgt 15188923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 30623357 - 30623317
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||||||||||||||||| ||| ||||| |||||||||||    
T  30623357 tcggggttcgaaccccagaccttgcatatattatgcattgt 30623317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 39076592 - 39076544
Alignment:
Q  188 ggtggagatcggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||| |||| ||||||||||||| || ||| |||||||||||||||||    
T  39076592 ggtggtgatcagggttcgaaccccggaccttgcatattttatgcattgt 39076544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 39077078 - 39077030
Alignment:
Q  188 ggtggagatcggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||| |||| ||||||||||||| || ||| |||||||||||||||||    
T  39077078 ggtggtgatcagggttcgaaccccggaccttgcatattttatgcattgt 39077030  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 9111113 - 9111067
Alignment:
Q  194 gatcggggttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    |||||||||||||||||| || ||| ||||| |||||||||||||||    
T  9111113 gatcggggttcgaaccccggaccttgcatatattatgcattgttcat 9111067  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 12808931 - 12808891
Alignment:
Q  198 ggggttcgaaccccagatctttcatattttatgcattgttc 238  Q
    ||||||||||||||||| ||| ||||| |||||||||||||    
T  12808931 ggggttcgaaccccagaccttgcatatattatgcattgttc 12808891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 29233973 - 29234011
Alignment:
Q  198 ggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  29233973 ggggttcgaaccccagaccttgcatattttatgcattgt 29234011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 11410691 - 11410647
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    ||||| ||||||||||||| ||| ||||||||||| |||||||||    
T  11410691 tcgggattcgaaccccagaccttacatattttatgtattgttcat 11410647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 37050993 - 37050949
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgttcat 240  Q
    |||||||||||||||| || ||| ||||||||||||||| |||||    
T  37050993 tcggggttcgaaccccggaccttgcatattttatgcattattcat 37050949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 40227893 - 40227853
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||||||||||||||||| |||  ||||||||||||||||    
T  40227893 tcggggttcgaaccccagaccttgtatattttatgcattgt 40227853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 5477 - 5437
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    |||||| |||||||||||| ||| |||||||||||||||||    
T  5477 tcggggatcgaaccccagaccttgcatattttatgcattgt 5437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 53377 - 53417
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    |||||||| |||||||||| ||| |||||||||||||||||    
T  53377 tcggggtttgaaccccagaccttgcatattttatgcattgt 53417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 580923 - 580963
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||||||||||| || |||||| |||||||||||||||||    
T  580923 tcggggttcgaacgccggatcttgcatattttatgcattgt 580963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 10303512 - 10303548
Alignment:
Q  200 ggttcgaaccccagatctttcatattttatgcattgt 236  Q
    |||||||||||| |||||| |||||||||||||||||    
T  10303512 ggttcgaaccccggatcttgcatattttatgcattgt 10303548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 12671749 - 12671785
Alignment:
Q  200 ggttcgaaccccagatctttcatattttatgcattgt 236  Q
    |||||||||||| |||||| |||||||||||||||||    
T  12671749 ggttcgaaccccggatcttgcatattttatgcattgt 12671785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 32180894 - 32180854
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  32180894 tcggggttcgaaccccagactttgcatattttatgcattgt 32180854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 47806253 - 47806293
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||||||||||||||||| ||| ||||| |||||||||||    
T  47806253 tcggggttcgaaccccagaccttgcatatattatgcattgt 47806293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 56564980 - 56565020
Alignment:
Q  196 tcggggttcgaaccccagatctttcatattttatgcattgt 236  Q
    ||||||||||||||| ||| ||| |||||||||||||||||    
T  56564980 tcggggttcgaaccctagaccttgcatattttatgcattgt 56565020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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