View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_179 (Length: 243)
Name: NF20633_low_179
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_179 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 52082101 - 52081874
Alignment:
| Q |
1 |
tcatgacatatatctttgaccattaagtatcttgtttgtggagatagcattcatgtgataaaaatagttgcaagctgtgtgtatcattgtttatgcttta |
100 |
Q |
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| T |
52082101 |
tcatgacatatatctttgaccattaagtatcttgtttgtggagatagcattcatgtgataaaaatagttccaagctgtgtgtatcattgtttatgcttg- |
52082003 |
T |
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| Q |
101 |
atttgtttgtgttccaaaggatggaagtgtaaaaggtacattttgtcggtttcttttgcattttctttgagctcaaccttttgtaatcatcaacctcaat |
200 |
Q |
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| T |
52082002 |
---tttatgtgttccaaaggatggaagtgtaaaaggtacattttgtcggtttcttttgcattttctttgagctcaaccttttgtaatcatcaacctcaat |
52081906 |
T |
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| Q |
201 |
atagtttccattttgtctgaatgaattttttg |
232 |
Q |
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| T |
52081905 |
atagttcccattttgtctgaatgaattttttg |
52081874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 52092304 - 52092155
Alignment:
| Q |
20 |
ccattaagtatcttgtttgtggagatagcattcatgtgataaaaatagttgcaag--ctgtgtgtatcattgtttatgctt---taatt--tgtt-tgtg |
111 |
Q |
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| T |
52092304 |
ccattaagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcaggttgtgtgtgtatctttgtttatacttgtctatgtgctgttatgtg |
52092205 |
T |
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| Q |
112 |
ttccaaaggatggaagtgtaaaaggtacattttgtcggtttcttttgcat |
161 |
Q |
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| T |
52092204 |
ttccaaagcatggaagtgtaaaaggaaccttttgtcagcttcttttgcat |
52092155 |
T |
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