View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_18 (Length: 621)
Name: NF20633_low_18
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 13 - 608
Target Start/End: Original strand, 46040177 - 46040777
Alignment:
| Q |
13 |
atcatcaattcaccacccttataaaattctaatttaatcctaaa-----attacaaggatagtacaacaataccatgattaaattaataccaagaatcca |
107 |
Q |
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| T |
46040177 |
atcatcaattcaccacccttataaaattctaatttaatcctaaaataaaattacaaggatagtacaacaataccatgattaaattaataccaagaatcca |
46040276 |
T |
|
| Q |
108 |
agaccagcatttatcgtgagtttcccagaaagcacaagactattagcagtgaccctaacttaatataataatatcatatagccaccgacgcgctttatgt |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46040277 |
agactagcatttatcgtgagtttcccagaaagcacaagactactagcagtgaccctaacttaatataataatatcatatagccaccgacgcgctttatgt |
46040376 |
T |
|
| Q |
208 |
tccaaacctttcaaaaggcacatcccattcatcacattcataccaaaataagtcacacctctcttcctaactcttcatttcaattttgctctatctttat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
46040377 |
tccaaacctttcaaaaggcacatcccattcatcacattcataccaaaataagtcacacctctcttccaaacttttcatttcaattttgctctatctttat |
46040476 |
T |
|
| Q |
308 |
tattttgtcaactacatactctaaccaattaatatgtcaaaggttaaagttgatcaacttaatcaactaagagaaatcttcagacgattcgacatggatt |
407 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46040477 |
tattttgtcaactacagactctaaacaattaatatgtcaaaggttaaagttgatcaacttaatcaactaagagaaatcttcagacgattcgacatggatt |
46040576 |
T |
|
| Q |
408 |
ccgatggcagtctaacaatgttagaactagcagcacttattcgttcgttaggcgtaaggccttcaggtgacgaagttcaaatcctattaaccaaaatgga |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46040577 |
ccgatggcagtctaacaatgttagaactagcagcacttattcgttcgttaggcgtaaggccttcaggtgacgaagttcaaatcctattaaccaaaatgga |
46040676 |
T |
|
| Q |
508 |
ctcaaacagaaatggttcggttgagttcgatgaattagtagaagccataatgccgaacatgaatgcagaagtattggtgaatcaagaacaacttataggt |
607 |
Q |
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||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46040677 |
ctcaaacggaaacggttctgttgagttcgatgaattagtagaagccataatgccgaacatgaatgcagaagtattggtgaatcaagaacaacttataggt |
46040776 |
T |
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| Q |
608 |
g |
608 |
Q |
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| T |
46040777 |
g |
46040777 |
T |
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