View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_180 (Length: 242)
Name: NF20633_low_180
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_180 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28412578 - 28412804
Alignment:
| Q |
1 |
actctgatagttccaataatccttaaacaataccgaaaagtccctccctctcgagcaatactttcttttttcctgtcttaaccctctgattcccgataaa |
100 |
Q |
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| T |
28412578 |
actctgatagttccaataatccttaaacaataccgaaaagtccctccctctcgaacaataatttcttttttcctgtcttaaccctctgattcccgataaa |
28412677 |
T |
|
| Q |
101 |
aggggctaataacttattgtgtcgaagataagtaaagtctaacaacaaattgtttcaatcagagatcaaacttgcatgcaccgagtcaaactcattaacc |
200 |
Q |
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| T |
28412678 |
aggggctaataacttattgtgtcgaagataagtaaagtctaacaacaaattgtttcaatcagagatcaaacttgcatgcaccgagtcaaactcattaacc |
28412777 |
T |
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| Q |
201 |
acgcaagtgtaaccgaagctcaataat |
227 |
Q |
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| T |
28412778 |
actcaagtgtaaccgaagctcaataat |
28412804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 1026465 - 1026494
Alignment:
| Q |
125 |
aagataagtaaagtctaacaacaaattgtt |
154 |
Q |
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| T |
1026465 |
aagataagtaaagtctaacaacaaattgtt |
1026494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 38585708 - 38585660
Alignment:
| Q |
124 |
gaagataagtaaagtctaacaacaaattgtttcaatcagagatcaaact |
172 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||| | |||||||| |
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| T |
38585708 |
gaaggtaagtaaagtctaacaaaaaattgtttcattcataaatcaaact |
38585660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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