View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_182 (Length: 239)
Name: NF20633_low_182
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_182 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 5484149 - 5484335
Alignment:
| Q |
19 |
taatgatagcagtctttgcattaaggaagagagagttgcactcctcaaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatggattggg |
118 |
Q |
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| T |
5484149 |
taatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaatagatctcaaagatccatccaattgcctttcttcatgagttggg |
5484248 |
T |
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| Q |
119 |
gaagattgctgtaactggaagggcatagaatgtgacaaccaaactggtcatgttctaaagttcgagctcaagccttatcttatctgc |
205 |
Q |
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| T |
5484249 |
gaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaagccctatcttatctgc |
5484335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 5495115 - 5495332
Alignment:
| Q |
18 |
ataatgatagcagtctttgcattaaggaagagagagttgcactcctcaaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatggattgg |
117 |
Q |
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| T |
5495115 |
ataatgttagcactctttgcattaaggaagagagagtggcactccttaaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatgggtcgg |
5495214 |
T |
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| Q |
118 |
ggaagattgctgtaactggaagggcatagaatgtgacaaccaaactggtcatgttctaaagttcgagctcaagccttatcttatctgcnnnnnnnctgca |
217 |
Q |
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| T |
5495215 |
ggaagattgctgtaattggaagggtatacaatgtaacaaccaaactggtcatgttttaaagcttaagctcaggccctatcttatctgcatcaaaactgta |
5495314 |
T |
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| Q |
218 |
agtatattttcactgtct |
235 |
Q |
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| T |
5495315 |
agtatattttcactgtct |
5495332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 205
Target Start/End: Original strand, 5489346 - 5489520
Alignment:
| Q |
31 |
tctttgcattaaggaagagagagttgcactcctcaaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatggattggggaagattgctgt |
130 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| || ||||| |||||||||||| ||||||||||||| ||| |
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| T |
5489346 |
tctttgcattaaggaagagagagtggcactccttaaaatcaaaaaagatctcaaggatccttcaaattgcctttcttcatgggttggggaagattgttgt |
5489445 |
T |
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| Q |
131 |
aactggaagggcatagaatgtgacaaccaaactggtcatgttctaaagttcgagctcaagccttatcttatctgc |
205 |
Q |
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| T |
5489446 |
aattggaagggtatagaatgtgacaaccaaactggtcatgttcaaaagtttgagctccggcgttatcttatctgc |
5489520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 5476213 - 5476425
Alignment:
| Q |
19 |
taatgatagcagtctttgcattaaggaagagagagttgcactcctcaaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatggattggg |
118 |
Q |
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| T |
5476213 |
taatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggg |
5476312 |
T |
|
| Q |
119 |
gaagattgctgtaactggaagggcatagaatgtgacaaccaaactggtcatgttctaaagttcgagctcaagccttatcttatctgcnnnnnnnctgcaa |
218 |
Q |
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| T |
5476313 |
gaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatattctaaagtttgagctcaatacctatgttatctgcaacaaaactgtaa |
5476412 |
T |
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| Q |
219 |
gtatattttcact |
231 |
Q |
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||||||||||||| |
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| T |
5476413 |
gtatattttcact |
5476425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 5481300 - 5481447
Alignment:
| Q |
19 |
taatgatagcagtctttgcattaaggaagagagagttgcactcctcaaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatggattggg |
118 |
Q |
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||||| ||||| |||||||||||||||||||||| | |||||||| || |||||||||||||||| ||||| | |||||| |||||||||||| ||||| |
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| T |
5481300 |
taatgttagcactctttgcattaaggaagagagaatggcactccttaacgtcaaaaaagatctcaatgatccttacaattgcctttcttcatgggttggg |
5481399 |
T |
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| Q |
119 |
gaagattgctgtaactggaagggcatagaatgtgacaaccaaactggt |
166 |
Q |
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||||||| ||| ||||| || |||||||||||| | ||||||||| |
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| T |
5481400 |
aaagattgttgtcgctggattggtatagaatgtgactatcaaactggt |
5481447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 5466553 - 5466684
Alignment:
| Q |
25 |
tagcagtctttgcattaaggaagagagagttgcactcctcaaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatggattggggaagat |
124 |
Q |
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| T |
5466553 |
tagcactctttgcattaaagaagagagggtggcactccttaacataaaaaaagatctgaacgatccttccaattgcctttcctcttgggttgggaaggat |
5466652 |
T |
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| Q |
125 |
tgctgtaactggaagggcatagaatgtgacaa |
156 |
Q |
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| T |
5466653 |
tgctgtgactggattggtatacaatgtgacaa |
5466684 |
T |
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