View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_184 (Length: 239)
Name: NF20633_low_184
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_184 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 2069742 - 2069964
Alignment:
| Q |
18 |
caatttggatgagctaatttagcttcttnnnnnnnn-cattttcaaccaccataagttgctttgtagggtgctcagtcactgattcagacgatgttaact |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2069742 |
caatttggatgagctaatttagcttcttaaaaaaaaacattttcaaccaccataagttgctttgtagggtgctcagtcactgattcagacgatgttaact |
2069841 |
T |
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| Q |
117 |
taattgtttgttgtttggaagtgccctcactaatgagtaaataaacgagtattaatagaaaaataattaatatacataattgatatttcaaagtgaaaat |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2069842 |
tagttgtttgttgtttggaagtgccctcactaatgagtaaataaacgagtattaatagaaaaataattaatacacataattgatatttcaaagtgaaaat |
2069941 |
T |
|
| Q |
217 |
taatttgaaacagaaaaacaata |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
2069942 |
taatttgaaacagaaaaacaata |
2069964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 2074088 - 2074310
Alignment:
| Q |
18 |
caatttggatgagctaatttagcttcttnnnnnnnn-cattttcaaccaccataagttgctttgtagggtgctcagtcactgattcagacgatgttaact |
116 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2074088 |
caatttggatgagctaatttagcttcttaaaaaaaaacattttcaaccaccataagttgctttgtagggtgctcagtcactgattcagacgatgttaact |
2074187 |
T |
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| Q |
117 |
taattgtttgttgtttggaagtgccctcactaatgagtaaataaacgagtattaatagaaaaataattaatatacataattgatatttcaaagtgaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2074188 |
taattgtttgttgtttggaagtgccctcactaatgagtaaataaacgagtattaatagaaaaataattaatacacataattgatatttcaaagtgaaaat |
2074287 |
T |
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| Q |
217 |
taatttgaaacagaaaaacaata |
239 |
Q |
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||||||||||| ||||||||||| |
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| T |
2074288 |
taatttgaaacggaaaaacaata |
2074310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 13496327 - 13496355
Alignment:
| Q |
17 |
acaatttggatgagctaatttagcttctt |
45 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
13496327 |
acaatttggatgagctaatttagcttctt |
13496355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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