View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_low_189 (Length: 238)
Name: NF20633_low_189
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_189 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42209546 - 42209775
Alignment:
| Q |
1 |
tgttatccatgtctttcgtatcacatatatcaatccatttagtttgttcatggnnnnnnnnnnntactttcatctgcgatcaacaacttatctttgaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42209546 |
tgttatccatgtctttcgtatcacatatatcaatccattt-gtttgttcatggaaaaaaaa---tactttcatttgcgatcaacaacttatctttgaaag |
42209641 |
T |
|
| Q |
101 |
agatttcccttatattccttgcgttgaaggagacacaaatggaggatttttcatag------------cctttcttatgctgcgctataagagatcatcc |
188 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
42209642 |
agatttcccttatattccttgcgtcgaaggagacacaaatggaggatttgtcatagcctttcgttttacctttcttatgctgcgctataagagatcaacc |
42209741 |
T |
|
| Q |
189 |
tcttcctcaaagagcttctcgaaattcttagtac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42209742 |
tcttcctcaaagagcttctcgaaattcttagtac |
42209775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University