View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_19 (Length: 602)
Name: NF20633_low_19
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 251 - 415
Target Start/End: Complemental strand, 11826561 - 11826397
Alignment:
| Q |
251 |
tgttaatatatgcttacattaaaacttcagtatatttcctaaaaataaaaacatcaaagaaatgcaatgtatttatttatatacagataatcaaagaaat |
350 |
Q |
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| T |
11826561 |
tgttaatatatgcttacattaaagcttcagtatattttctaaaaataaaaacatcaaagaaatgcaatgtatttatttatatacagataatcaaagaaat |
11826462 |
T |
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| Q |
351 |
gttacgccttgtgagtatgaacttcgcaagttttcgggaggcaaaaagagatgttaccatcaatg |
415 |
Q |
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| T |
11826461 |
gttacgccttgtgagtatgaacttcgcaagttttcgggaggcaaaaagagatgttaccatcaatg |
11826397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 466 - 586
Target Start/End: Complemental strand, 11826177 - 11826057
Alignment:
| Q |
466 |
attactaatttatctattttgtatagattggagcgagtaaatccaaattgtcctattactagcttaccatcaccaaagcccaaagacaattgccttgcta |
565 |
Q |
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| T |
11826177 |
attactaatttatctatttcgtgtaggcttgatcgagtaaatccagattgtcctattactagcttaccatcaccaaagcccaaagacaattgccttgcta |
11826078 |
T |
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| Q |
566 |
aggtgataaaggtttcaagtg |
586 |
Q |
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| T |
11826077 |
aggtgataaaggtttcaagtg |
11826057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 586
Target Start/End: Complemental strand, 11799383 - 11799275
Alignment:
| Q |
478 |
tctattttgtatagattggagcgagtaaatccaaattgtcctattactagcttaccatcaccaaagcccaaagacaattgccttgctaaggtgataaagg |
577 |
Q |
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| T |
11799383 |
tctattttatgtaggttggagcgagtaaatccagaatgccctattacttgcttaccattatccaagcctatagacaattgcctttccaaggtgataaagg |
11799284 |
T |
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| Q |
578 |
tttcaagtg |
586 |
Q |
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| T |
11799283 |
tttcaagtg |
11799275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 11826633 - 11826584
Alignment:
| Q |
118 |
atacaatggtgatgttggcttgagatcttgaagtgtcatcactttgaagt |
167 |
Q |
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| T |
11826633 |
atacaatggtgatgttggcttgagatcttgaagtgtcctcactttgaagt |
11826584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 505 - 576
Target Start/End: Complemental strand, 11815265 - 11815194
Alignment:
| Q |
505 |
aatccaaattgtcctattactagcttaccatcaccaaagcccaaagacaattgccttgctaaggtgataaag |
576 |
Q |
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| T |
11815265 |
aatccagaatgtcctatgacttgcttaccatcatcaaagcccatagacaattgccttgctagggtgataaag |
11815194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 11816361 - 11816278
Alignment:
| Q |
332 |
tacagataatcaaagaaatgttacgccttgtgagtatgaacttcgcaagttttcgggaggcaaaaagagatgttaccatcaatg |
415 |
Q |
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| T |
11816361 |
tacagataatcaacgaagtgttacgccttgtcagcatcaacttcgcaatttttcgggaggcaactatagacgttaacatcaatg |
11816278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 415
Target Start/End: Complemental strand, 11802288 - 11802199
Alignment:
| Q |
326 |
tttatatacagataatcaaagaaatgttacgccttgtgagtatgaacttcgcaagttttcgggaggcaaaaagagatgttaccatcaatg |
415 |
Q |
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| T |
11802288 |
tttatatacaggtaatcaacgaaatgttacgtgttgtcggtttgaatttcgcactttttcgggaggcaactaaagatgttaacatgaatg |
11802199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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