View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_191 (Length: 238)
Name: NF20633_low_191
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_191 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 21542382 - 21542590
Alignment:
| Q |
14 |
attattctataacaagcatacaaagatgacattagagattgtgaccctttgactaaaaagaaattatcaatttatcaatatgtatggtgagatgcataaa |
113 |
Q |
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| T |
21542382 |
attattctataacaagcatacaaagatgacattagagattgtgaccctttgactaaaaagaaattatcaatttatcaatatgtatggtgagatgcataaa |
21542481 |
T |
|
| Q |
114 |
tatgtaagaagccggctgaaaagcaaatggctacaaaagcatatatataaaaatattgatgcatatagggtgaatttaatttcctatattaaagtactat |
213 |
Q |
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| T |
21542482 |
tatgtaagaagccggctgaaaagcaaatggctacaaaagcatatatataaaaatattgatgcatatagggtgaatttaatttcctatattaaagtactat |
21542581 |
T |
|
| Q |
214 |
agtggttac |
222 |
Q |
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||||||||| |
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| T |
21542582 |
agtggttac |
21542590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 12795312 - 12795199
Alignment:
| Q |
25 |
acaagcatacaaagatgacattagagattgtgacccttt-gactaaaaagaaattatcaatttatcaatatgtatggtga---gatgcataaatatgtaa |
120 |
Q |
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|||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||| ||||||||||| ||||| |
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| T |
12795312 |
acaaacatacaaagatgaatttagagattgtgacccttttgactaaatg--aattatcaatttatcaacttgtatgatgatgagatgcataaatgtgtaa |
12795215 |
T |
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| Q |
121 |
gaagccggctgaaaag |
136 |
Q |
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| T |
12795214 |
gaagccggccgaaaag |
12795199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 12795182 - 12795154
Alignment:
| Q |
183 |
gtgaatttaatttcctatattaaagtact |
211 |
Q |
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| T |
12795182 |
gtgaatttaatttcctatattaaagtact |
12795154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 23444194 - 23444256
Alignment:
| Q |
14 |
attattctataacaagcatacaaag----atgacattagagattgtgaccctttgactaaaaa |
72 |
Q |
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|||||||| |||||||||||||||| |||||||||||||| |||||||||| | |||||| |
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| T |
23444194 |
attattctttaacaagcatacaaagaaatatgacattagagatagtgaccctttaagtaaaaa |
23444256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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