View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_193 (Length: 238)

Name: NF20633_low_193
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_193
NF20633_low_193
[»] chr2 (6 HSPs)
chr2 (1-136)||(37709040-37709175)
chr2 (1-136)||(7399839-7399973)
chr2 (1-136)||(10392352-10392486)
chr2 (29-132)||(43287231-43287334)
chr2 (1-45)||(24401617-24401661)
chr2 (1-33)||(43293298-43293330)
[»] chr4 (3 HSPs)
chr4 (1-133)||(37832436-37832568)
chr4 (64-121)||(42124268-42124325)
chr4 (1-43)||(27185166-27185208)
[»] chr3 (3 HSPs)
chr3 (2-134)||(46626958-46627090)
chr3 (1-136)||(2852364-2852497)
chr3 (1-103)||(24627678-24627780)
[»] chr6 (1 HSPs)
chr6 (1-136)||(2971224-2971359)
[»] chr5 (7 HSPs)
chr5 (1-136)||(5381397-5381531)
chr5 (1-136)||(26698559-26698693)
chr5 (1-136)||(26968291-26968425)
chr5 (1-136)||(27870800-27870934)
chr5 (1-136)||(22976655-22976789)
chr5 (1-103)||(11062013-11062114)
chr5 (51-106)||(18412557-18412613)
[»] chr8 (1 HSPs)
chr8 (41-110)||(13888836-13888905)
[»] chr1 (1 HSPs)
chr1 (41-96)||(8220793-8220848)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 37709175 - 37709040
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37709175 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 37709076  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgagctt 136  Q
    ||||||| ||||||||||||||||||||||||||||    
T  37709075 gaacaattaaagaataaagaacatgtccgtgagctt 37709040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 7399839 - 7399973
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7399839 ttgtaatttcataatctaaattttctttaaaa-atactttaaaataatgaaaggtataatttcattaaaatgtaacataattgatggtatattttttaaa 7399937  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgagctt 136  Q
    ||| ||||||||||||||||||||||||||||||||    
T  7399938 gaataatcaaagaataaagaacatgtccgtgagctt 7399973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 10392352 - 10392486
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10392352 ttgtaatttcgtaatctaaattttctttaaaa-atactttaaaataatgaaaggtataatttcattaaaatgtaacataattgatggtatattttttaaa 10392450  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgagctt 136  Q
    ||| |||||||||||||||||||||| |||||||||    
T  10392451 gaataatcaaagaataaagaacatgttcgtgagctt 10392486  T

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Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 43287334 - 43287231
Alignment:
Q  29 aaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaagaacaatcaaagaataaagaacatgtcc 128  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43287334 aaaaaatactttaaaataatgaaaggtatgatttcattaaaatgtaacacaattgatggtatattttttaaagaataatcaaagaataaagaacatgtcc 43287235  T
Q  129 gtga 132  Q
    ||||    
T  43287234 gtga 43287231  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24401617 - 24401661
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaat 45  Q
    ||||||||| |||| |||| |||||||||||||||||||||||||    
T  24401617 ttgtaattttgtaaactaatttttctttaaaaaatactttaaaat 24401661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43293330 - 43293298
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  43293330 ttgtaatttcgtaatctaaattttctttaaaaa 43293298  T

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Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 37832568 - 37832436
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37832568 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacataattgatggtatattttttaaa 37832469  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgag 133  Q
    |||||||||||||||||| ||||||||||||||    
T  37832468 gaacaatcaaagaataaaaaacatgtccgtgag 37832436  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 42124268 - 42124325
Alignment:
Q  64 attaaaatgtaacacaattgatggtatattttttaaagaacaatcaaagaataaagaa 121  Q
    ||||||||||||||||| | ||||||||||||| |||||  ||||| |||||||||||    
T  42124268 attaaaatgtaacacaactaatggtatatttttgaaagattaatcagagaataaagaa 42124325  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27185166 - 27185208
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaa 43  Q
    ||||||||| |||| |||| |||||||||||||||||||||||    
T  27185166 ttgtaattttgtaaactaatttttctttaaaaaatactttaaa 27185208  T

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Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 46626958 - 46627090
Alignment:
Q  2 tgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaag 101  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46626958 tgtaatttcgtaatctaaattatctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaag 46627057  T
Q  102 aacaatcaaagaataaagaacatgtccgtgagc 134  Q
    || ||||||||||||||||||||||||||||||    
T  46627058 aataatcaaagaataaagaacatgtccgtgagc 46627090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 2852497 - 2852364
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2852497 ttgtaatttcgtaatctaaattttctttaaaaa-tacttaaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 2852399  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgagctt 136  Q
    ||| ||||  ||||||||||||||||||||||||||    
T  2852398 gaataatc-cagaataaagaacatgtccgtgagctt 2852364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24627678 - 24627780
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24627678 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 24627777  T
Q  101 gaa 103  Q
    |||    
T  24627778 gaa 24627780  T

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Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 2971359 - 2971224
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||    
T  2971359 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaagatataatttcattaaaatgtaacacaattaatgatatattttttaaa 2971260  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgagctt 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  2971259 gaacaatcaaagaataaagaacatgtccgtgagctt 2971224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 5381397 - 5381531
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5381397 ttgtaatttcgtaatctaaattttctttaaaaa-tacttaaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 5381495  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgagctt 136  Q
    ||| ||||||||||||||||||||||||||||||||    
T  5381496 gaataatcaaagaataaagaacatgtccgtgagctt 5381531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 26698559 - 26698693
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26698559 ttgtaatttcgtaatctaaattttctttaaaa-atactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 26698657  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgagctt 136  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  26698658 gaataatcaaagaataaagaatatgtccgtgagctt 26698693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 26968291 - 26968425
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26968291 ttgtaatttcgtaatctaaattttctttaaaa-atactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 26968389  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgagctt 136  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  26968390 gaataatcaaagaataaagaatatgtccgtgagctt 26968425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 27870800 - 27870934
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27870800 ttgtaatttcgtaatctaaattttctttaaaa-atactttaaaataattaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 27870898  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgagctt 136  Q
    ||| ||||||||||||||||||||||||||||||||    
T  27870899 gaataatcaaagaataaagaacatgtccgtgagctt 27870934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 22976655 - 22976789
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  22976655 ttgtaatttcgtaatctaaattttctttaaaa-atactttaaaataatgaaaggtataattttattaaaatgtaacataattgatggtatattttttaaa 22976753  T
Q  101 gaacaatcaaagaataaagaacatgtccgtgagctt 136  Q
    ||| ||||||||||||||||||||||| ||||||||    
T  22976754 gaataatcaaagaataaagaacatgtcggtgagctt 22976789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 11062013 - 11062114
Alignment:
Q  1 ttgtaatttcgtaatctaaattttctttaaaaaatactttaaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaa 100  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  11062013 ttgtaatttcgtaatctaaattttctttaaaaa-tattttaaaataatgaaaggtataatttcattaaaatgtaacacagttgatgatatatcttttaaa 11062111  T
Q  101 gaa 103  Q
    |||    
T  11062112 gaa 11062114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 18412557 - 18412613
Alignment:
Q  51 aaggtataatttcattaaaatgt-aacacaattgatggtatattttttaaagaacaa 106  Q
    ||||||||||| ||||||||||| || |||| ||||| ||||||||| |||||||||    
T  18412557 aaggtataattgcattaaaatgtaaatacaactgatgatatatttttgaaagaacaa 18412613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 13888905 - 13888836
Alignment:
Q  41 aaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttttaaagaacaatcaa 110  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||    
T  13888905 aaaataataaaaggtataatttcattaaaatgtaacacaactgatattatattttctaaagaacaatcaa 13888836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 8220793 - 8220848
Alignment:
Q  41 aaaataatgaaaggtataatttcattaaaatgtaacacaattgatggtatattttt 96  Q
    ||||||| |||| ||||||||||||||||||||||||||| | ||| |||||||||    
T  8220793 aaaataacgaaaagtataatttcattaaaatgtaacacaactaatgctatattttt 8220848  T

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