View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_196 (Length: 237)
Name: NF20633_low_196
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_196 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 33716384 - 33716186
Alignment:
| Q |
37 |
agactgtggagtggctgcaattcctttctattattctaagcttagagtttaaggtgcacaacttatatttaaatactacggtccaaatcacaagtagaca |
136 |
Q |
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| T |
33716384 |
agactgtggagtggctgcaattcctttctattattctaagcttagagtttaaggtgcacaacttacatttaaatactacggtccaaatcacaagtaaaca |
33716285 |
T |
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| Q |
137 |
tgcaaccaaacatggaataagatc--------------tcaaggtttctaaacagtcttactttttggacagatgctggtaattcagcaaccacatttt |
221 |
Q |
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| T |
33716284 |
tgcaaccaaacatggaataagatctcaatgttaacatctcaaggtttctaaacagtcttactttttggacagatgctggtaattcagcaaccacatttt |
33716186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 32183640 - 32183566
Alignment:
| Q |
45 |
gagtggctgcaattcctttctattattctaagcttagagtttaaggtgcacaacttatatttaaatactacggtc |
119 |
Q |
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| T |
32183640 |
gagtggctgcagttcttttctattattttaagcttaaggtttacgatgtacaacttgtatttacatacaacggtc |
32183566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 7260160 - 7260222
Alignment:
| Q |
54 |
caattcctttctattattctaagcttagagtttaaggtgcacaacttatatttaaatactacg |
116 |
Q |
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| T |
7260160 |
caatacctttctattattttaagcttagagtttacggtatgcaacttgtattttaatactacg |
7260222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 4999915 - 4999943
Alignment:
| Q |
94 |
acaacttatatttaaatactacggtccaa |
122 |
Q |
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| T |
4999915 |
acaacttatatttaaatactacggtccaa |
4999943 |
T |
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