View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_2 (Length: 862)

Name: NF20633_low_2
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_2
NF20633_low_2
[»] chr2 (14 HSPs)
chr2 (1-326)||(14007634-14007962)
chr2 (721-845)||(14006847-14006971)
chr2 (576-708)||(14007299-14007436)
chr2 (105-215)||(45035155-45035265)
chr2 (330-399)||(14007430-14007499)
chr2 (106-215)||(45033361-45033470)
chr2 (107-215)||(17308689-17308797)
chr2 (140-215)||(1015756-1015831)
chr2 (103-209)||(3372458-3372564)
chr2 (1-92)||(20957447-20957538)
chr2 (1-92)||(20957619-20957710)
chr2 (1-102)||(17149055-17149156)
chr2 (97-200)||(33187188-33187291)
chr2 (145-215)||(30191620-30191690)
[»] chr3 (12 HSPs)
chr3 (1-209)||(26667004-26667213)
chr3 (111-215)||(27682197-27682301)
chr3 (140-215)||(41874545-41874620)
chr3 (111-215)||(28133726-28133830)
chr3 (105-215)||(4602293-4602403)
chr3 (1-119)||(25836377-25836495)
chr3 (19-74)||(548119-548174)
chr3 (3-101)||(9032830-9032928)
chr3 (105-215)||(4609105-4609215)
chr3 (25-93)||(43819944-43820012)
chr3 (111-208)||(26317951-26318048)
chr3 (105-146)||(27972591-27972632)
[»] chr5 (12 HSPs)
chr5 (4-216)||(6742441-6742653)
chr5 (105-215)||(10410798-10410908)
chr5 (105-204)||(10412371-10412470)
chr5 (111-215)||(8081508-8081612)
chr5 (140-215)||(25725808-25725883)
chr5 (1-102)||(4897423-4897522)
chr5 (1-119)||(33689872-33689990)
chr5 (1-88)||(21637272-21637359)
chr5 (140-215)||(25502025-25502100)
chr5 (108-215)||(25506938-25507045)
chr5 (1-100)||(33688163-33688262)
chr5 (142-209)||(40382763-40382830)
[»] chr8 (6 HSPs)
chr8 (3-215)||(35674837-35675048)
chr8 (97-215)||(30634229-30634347)
chr8 (110-202)||(35673345-35673437)
chr8 (3-91)||(29456284-29456372)
chr8 (140-215)||(1175148-1175223)
chr8 (110-207)||(1173513-1173610)
[»] chr4 (8 HSPs)
chr4 (105-209)||(28395559-28395667)
chr4 (1-119)||(42664939-42665057)
chr4 (1-102)||(10032679-10032779)
chr4 (148-216)||(4847687-4847755)
chr4 (1-63)||(42665175-42665237)
chr4 (1-63)||(18812702-18812764)
chr4 (41-92)||(5653307-5653358)
chr4 (13-64)||(18807515-18807565)
[»] chr6 (6 HSPs)
chr6 (97-216)||(15689026-15689145)
chr6 (1-100)||(30488442-30488541)
chr6 (111-187)||(9373599-9373675)
chr6 (1-64)||(25050869-25050932)
chr6 (97-208)||(34350341-34350452)
chr6 (29-71)||(26857853-26857895)
[»] chr7 (10 HSPs)
chr7 (1-102)||(29598097-29598198)
chr7 (140-208)||(29924665-29924733)
chr7 (1-102)||(21633313-21633414)
chr7 (123-208)||(21464528-21464615)
chr7 (1-102)||(21631122-21631215)
chr7 (1-102)||(21631352-21631445)
chr7 (39-120)||(3232944-3233025)
chr7 (1-92)||(21633093-21633176)
chr7 (1-66)||(9878298-9878362)
chr7 (39-88)||(29856101-29856150)
[»] chr1 (6 HSPs)
chr1 (1-102)||(1284837-1284937)
chr1 (97-216)||(44782182-44782301)
chr1 (111-215)||(46679708-46679812)
chr1 (16-102)||(33072760-33072845)
chr1 (4-102)||(10653500-10653594)
chr1 (6-86)||(41892098-41892178)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-91)||(9093-9183)
[»] scaffold0245 (2 HSPs)
scaffold0245 (1-102)||(9482-9582)
scaffold0245 (1-102)||(11104-11204)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-102)||(9810-9910)
[»] scaffold0160 (1 HSPs)
scaffold0160 (1-74)||(28419-28492)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-133; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 14007634 - 14007962
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaact----cacccctagaaataactctcatcat 96  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    ||||| || |||||||||||| |||    
T  14007634 accatagttagttaatatgtaaactatggttagttggttggttaggtagttaagagttagttagactaacttactcacccatataaataactctcaccat 14007733  T
Q  97 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 196  Q
    ||||||||||| ||||||||||||||||||||||| |||||   |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  14007734 tgtactatttttatatcttttattcatttctatctatgtca---ctcctagagagaattagacaatccatctttccattgcatttgacctagaaccatgg 14007830  T
Q  197 aatcctttgattcctaacacatgcaatcttctatcaattagttaaactgcaacttgaatgatatatcaaacaaaaatgaccatgttgagagaaataacgt 296  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14007831 aatcctttgattcataacacatgcaatcttctatcaattggttaaactacaacttgaatgatatatcaaacaaaaatgaccatgttgagagaaataacat 14007930  T
Q  297 gttctagtttctc--tagatgtttagaataat 326  Q
    |||||||||||||  |||||||||||||||||    
T  14007931 gttctagtttctctttagatgtttagaataat 14007962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 721 - 845
Target Start/End: Complemental strand, 14006971 - 14006847
Alignment:
Q  721 tttaagaaaaagagcaatgttattcattgccaagaaaaaacgaacgaaataattacgaagcatatttcctagttaaaatggttcaacagtaaacctgtgg 820  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14006971 tttaagaaaaagagcaatgttattcattgccaagaaaaaagcaacgaaataattacgaagcatatttcctagttaaaatggttcaacagtaaacctgtgg 14006872  T
Q  821 aatttgtggaaatcatgcaggaaac 845  Q
    |||||||||||||||||||||||||    
T  14006871 aatttgtggaaatcatgcaggaaac 14006847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 576 - 708
Target Start/End: Complemental strand, 14007436 - 14007299
Alignment:
Q  576 ttacatggaaatgtcnnnnnnnaatagtgattcttgttggatacaatataaa-------ccacacatgcagaaggtctcaagaaccttaatgatatcttg 668  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||  ||||    
T  14007436 ttacatggaaatgtctttttttaatagtgattcttgttggatacaatataaattataaaccacacatgcagaaggtctcaagaaccttaatgat--cttg 14007339  T
Q  669 tatctcacactaaatttatgagtaactgatgttcaattat 708  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14007338 tatctcacactaaatttatgagtaactgatgttcaattat 14007299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 45035155 - 45035265
Alignment:
Q  105 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 204  Q
    ||||| |||||||||||||||  |||||||| || |||||||||||||| || |||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  45035155 tttcaaatcttttattcatttgcatctttgtgatgactcctagagagaactatacaatctatctttccattgcatttgatctagaaccatggaatccttt 45035254  T
Q  205 gattcctaaca 215  Q
    ||||| |||||    
T  45035255 gattcataaca 45035265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 14007499 - 14007430
Alignment:
Q  330 ccctcttttgcttgtactgattttgttcatcttccatcgaatcctgatgaaagactaacattgttacatg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14007499 ccctcttttgcttgtactgattttgttcatcttccatcgaatcctgctgaaagactaacattgttacatg 14007430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 45033361 - 45033470
Alignment:
Q  106 ttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttg 205  Q
    ||||||||||||||||||||  |||||||| || ||||||||||| ||||| |||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  45033361 ttcatatcttttattcatttgcatctttgtgatgactcctagagaaaattatacaatctatctttccattgcatttgatctagaaccatggaatcttttg 45033460  T
Q  206 attcctaaca 215  Q
    |||| |||||    
T  45033461 attcataaca 45033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 17308689 - 17308797
Alignment:
Q  107 tcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttga 206  Q
    ||||||||||||| || || | |||| || || |||||||||| ||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||    
T  17308689 tcatatcttttatacaattgtttcttggtaatgactcctagagtgaattacacaatctatctttccattgcatttgatctagaacaatggaatcctttga 17308788  T
Q  207 ttcctaaca 215  Q
    ||| |||||    
T  17308789 ttcataaca 17308797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 1015756 - 1015831
Alignment:
Q  140 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 215  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  1015756 actccaagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 1015831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 3372564 - 3372458
Alignment:
Q  103 attttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcct 202  Q
    |||||||||| |||||||||||| |||||||||  | ||||| ||||||||||| | |||| |||||||||||| |||||||||| ||| |||||||| |    
T  3372564 attttcatatattttattcatttttatctttgtggtgactcccagagagaattatagaatctatctttccattgtatttgacctagaactatggaatctt 3372465  T
Q  203 ttgattc 209  Q
    |||||||    
T  3372464 ttgattc 3372458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 20957447 - 20957538
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctca 92  Q
    ||||||||||| | ||||||||| ||||||||||| | | |||||||||||  |||||||||||||||||||||||||| |||||| |||||    
T  20957447 accatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagactaactcacccctataaataagtctca 20957538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 20957619 - 20957710
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctca 92  Q
    ||||||||||| | ||||||||| ||||||||||| | | |||||||||||  |||||||||||||||||||||||||| |||||| |||||    
T  20957619 accatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagactaactcacccctataaataagtctca 20957710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 17149156 - 17149055
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||| ||| ||||| ||||||||||||| || ||| ||| ||| |||| ||||||||||| ||| ||||  || |||| ||||||||||||    
T  17149156 accatagttagttgataggtaaattatggttagttggttgtttaagtaattaggagtcagttagactaattcatccctgtaagtaaccctcatcattgta 17149057  T
Q  101 ct 102  Q
    ||    
T  17149056 ct 17149055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 33187291 - 33187188
Alignment:
Q  97 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 196  Q
    ||||||||||   |||||||||| || || | |||| || || |||| |||||| |||||||||||| ||||||||||| ||||||||||| ||| ||||    
T  33187291 tgtactatttcattatcttttatacaattgtttcttggtaatgactcatagagataattacacaatctatctttccattacatttgacctagaacaatgg 33187192  T
Q  197 aatc 200  Q
    ||||    
T  33187191 aatc 33187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 30191620 - 30191690
Alignment:
Q  145 tagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 215  Q
    |||||||||||| | |||| |||||| ||||| |||||| ||| ||||||||||||||||||||| |||||    
T  30191620 tagagagaattatataatctatcttttcattgtatttgatctagaaccatggaatcctttgattcataaca 30191690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 1e-71; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 26667213 - 26667004
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  26667213 accatagttagttaatatgtaaattatggttagttggttagttaggtagttaagagttagttagactaactcacccctataaataactctcaccattgta 26667114  T
Q  101 ctattttcatatcttttattca-tttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaat 199  Q
    | |||||||||||||||||||| ||||||||||||| || |||| ||| ||||||||||||||| | |||||||| |||||||| ||| ||||||| |||    
T  26667113 ccattttcatatcttttattcattttctatctttgtgatgactcttagggagaattacacaatctacctttccatcgcatttgatctagaaccatgaaat 26667014  T
Q  200 cctttgattc 209  Q
    ||||||||||    
T  26667013 cctttgattc 26667004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 27682197 - 27682301
Alignment:
Q  111 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 210  Q
    |||||||||||||||  |||||||| || |||||||||||||| ||||||||  | ||||||||||||||||| ||| |||||||||||||||||||||     
T  27682197 atcttttattcatttgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattca 27682296  T
Q  211 taaca 215  Q
    |||||    
T  27682297 taaca 27682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 41874545 - 41874620
Alignment:
Q  140 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 215  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  41874545 actcctagagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttgattcataaca 41874620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 28133726 - 28133830
Alignment:
Q  111 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 210  Q
    |||||||||||| ||  |||||||| || |||||||||||||| ||||||||  | ||||||||||||||||| ||| |||||||||||||||||||||     
T  28133726 atcttttattcaattgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattca 28133825  T
Q  211 taaca 215  Q
    |||||    
T  28133826 taaca 28133830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 4602293 - 4602403
Alignment:
Q  105 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 204  Q
    |||||||||||||||| | ||  |||||||| || |||| ||||||||| || |||||  | ||||||||||||||||| ||| ||||||||||||||||    
T  4602293 tttcatatcttttatttaattgcatctttgttatgactcatagagagaactatacaatttacctttccattgcatttgatctagaaccatggaatccttt 4602392  T
Q  205 gattcctaaca 215  Q
    ||||| |||||    
T  4602393 gattcataaca 4602403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 25836377 - 25836495
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||| |||  |||||||||| ||||||| | |||||||||||| |||||||||||||||  ||| || || |||||||||||| |||||||    
T  25836377 accatagttagttgatagataaactatggctagttggttagttaggtagttaggagttagttagactagttcatccttataaataactctcaccattgta 25836476  T
Q  101 ctattttcatatcttttat 119  Q
    || | ||  ||||||||||    
T  25836477 ctctcttgttatcttttat 25836495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 548119 - 548174
Alignment:
Q  19 gtaaactatggttagttggctggttaggtagttaagagttagttagactaactcac 74  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  548119 gtaaactatgattagttggttggttaggtagttaagagttagttagactaactcac 548174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 9032928 - 9032830
Alignment:
Q  3 catagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgtac 101  Q
    ||||||||||| ||||| ||||||||||||| ||| |||||  ||||||||||||||||||||||||||  ||| || ||||| || ||| ||||||||    
T  9032928 catagttagttgatatgaaaactatggttagctggttggttgagtagttaagagttagttagactaactttcccttataaatagctttcaccattgtac 9032830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 4609105 - 4609215
Alignment:
Q  105 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 204  Q
    |||||||||||||||||| ||  |||||||| || ||| |||||||||| || |||||  | ||||| ||||||||||| ||| ||| || |||||||||    
T  4609105 tttcatatcttttattcaattgcatctttgtgatgactgctagagagaactatacaatttacctttcaattgcatttgatctagaacaattgaatccttt 4609204  T
Q  205 gattcctaaca 215  Q
    ||||| |||||    
T  4609205 gattcataaca 4609215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 43820012 - 43819944
Alignment:
Q  25 tatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcat 93  Q
    |||| |||||||| ||||||||||||||| ||||||| |||||||||||| |||| ||||||| |||||    
T  43820012 tatgattagttggttggttaggtagttaaaagttagtaagactaactcactcctataaataaccctcat 43819944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 26318048 - 26317951
Alignment:
Q  111 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 208  Q
    |||||||||||||||||||  || | || ||||||  |||| | || |||||| |||||| ||||| ||||||  || ||||||| ||||||||||||    
T  26318048 atcttttattcatttctattgttctaatgactcctcaagagcaataaacaatctatcttttcattgtatttgatttagaaccatgaaatcctttgatt 26317951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 27972591 - 27972632
Alignment:
Q  105 tttcatatcttttattcatttctatctttgtcataactccta 146  Q
    ||||||||||||||||||||||||| ||||| || |||||||    
T  27972591 tttcatatcttttattcatttctatatttgtgatgactccta 27972632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 6742441 - 6742653
Alignment:
Q  4 atagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgtacta 103  Q
    ||||||| ||||||| |||| ||||||||||||| |||||||||| |||||||||||||| ||||| | ||  ||| ||||||||||||  |||||||||    
T  6742441 atagttaattaatatataaattatggttagttggttggttaggtaattaagagttagttaaactaatttacttctataaataactctcactattgtacta 6742540  T
Q  104 ttttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctt 203  Q
    |||| |||| ||||||| |||||||||||||| || |||| ||||||||| ||||||||| ||||||||||||||||||| ||| ||| |||||||| ||    
T  6742541 ttttgatattttttatttatttctatctttgtgatgactcgtagagagaaatacacaatctatctttccattgcatttgatctagaactatggaatcgtt 6742640  T
Q  204 tgattcctaacac 216  Q
    |||||| ||||||    
T  6742641 tgattcataacac 6742653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 10410798 - 10410908
Alignment:
Q  105 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 204  Q
    ||||| |||||||||||||||  |||||||  || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10410798 tttcacatcttttattcatttgcatctttgggatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatccttt 10410897  T
Q  205 gattcctaaca 215  Q
    ||||| |||||    
T  10410898 gattcataaca 10410908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 10412371 - 10412470
Alignment:
Q  105 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 204  Q
    |||||||||||||||||||||  |||||||| |||| || |||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||    
T  10412371 tttcatatcttttattcatttgcatctttgtgataattcttagagaaaattacacaatctatctttcgattgcatttgacctaaaaccatgaaatccttt 10412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 8081508 - 8081612
Alignment:
Q  111 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 210  Q
    ||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||     
T  8081508 atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaaccctttgattca 8081607  T
Q  211 taaca 215  Q
    |||||    
T  8081608 taaca 8081612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 25725883 - 25725808
Alignment:
Q  140 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  25725883 actcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 25725808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 4897522 - 4897423
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||| ||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||  ||||||    
T  4897522 accatagttagataatg-gtaaactatggttagttggttgattaggtagttaagagttagttagactaactca-ccctataaataactctcaatattgta 4897425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 33689872 - 33689990
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||||||| ||||||||||| || |||| | ||||||||||||||||| | |||||||||||  ||| || ||||| ||||||  ||||||    
T  33689872 accatagttagttaataagtaaactatggataattggttagttaggtagttaagagtcaattagactaacttgcccttataaatagctctcactattgta 33689971  T
Q  101 ctattttcatatcttttat 119  Q
    |||||||  ||||||||||    
T  33689972 ctattttgttatcttttat 33689990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 21637359 - 21637272
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataact 88  Q
    ||||||||||||| |||||  |||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| || ||||||||    
T  21637359 accatagttagtttatatgagaactatagttagttggttggttaggtagttaggagttagttacactaactcacccttataaataact 21637272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 25502100 - 25502025
Alignment:
Q  140 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 215  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| |||||| |||||    
T  25502100 actcctagagagaattacacaatctatatttccattgcatttgatctagaaccatggaatcctctgattcataaca 25502025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 25507045 - 25506938
Alignment:
Q  108 catatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgat 207  Q
    ||||| |||||| || || | ||||||| || | ||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| ||    
T  25507045 catattttttatacaattgtttctttgtaatgaatcccagagagaattacataatctatctttccattgcatttgatctaaaaccatggaatccttttat 25506946  T
Q  208 tcctaaca 215  Q
    || |||||    
T  25506945 tcataaca 25506938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 33688163 - 33688262
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||||||||||||| ||||||| ||| | |||||||||| |||||||||| | |||||||| |||| |||  |||| |||||| |||||||    
T  33688163 accatagttagttaatatgtaaattatggttggttagttggttaggtatttaagagttactaagactaacccacctctattaatagctctcaccattgta 33688262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 40382830 - 40382763
Alignment:
Q  142 tcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattc 209  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  40382830 tcctagagagaattacacaatttatctttccattgcatttgacctagaacaatgtaatcctttgattc 40382763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 8e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 35675048 - 35674837
Alignment:
Q  3 catagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatc-attgtac 101  Q
    ||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||| |||| |||||||||||| | ||||       
T  35675048 catagttagttaatatgtaaactatggttagttggttagttagatagttaggagttagttagactaactcactcctataaataactctcaactattg--- 35674952  T
Q  102 tattttca-tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatc 200  Q
    |||| ||| | |||   |||||||| ||||||||| || |||||||||||||||||||||||| | |||||||||||||||||| || ||||||| ||||    
T  35674951 tattctcattgtctaaaattcatttatatctttgtgatgactcctagagagaattacacaatctacctttccattgcatttgacttagaaccatgcaatc 35674852  T
Q  201 ctttgattcctaaca 215  Q
    ||  ||||| |||||    
T  35674851 ctcagattcgtaaca 35674837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 30634347 - 30634229
Alignment:
Q  97 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 196  Q
    ||||||||||   |||||||||| || || | |||| || || |||| |||||||||||||| |||| |||||||||||||||||||||||||||||| |    
T  30634347 tgtactatttcattatcttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattgcatttgacctaaaaccatag 30634248  T
Q  197 aatcctttgattcctaaca 215  Q
    ||||||||||||| |||||    
T  30634247 aatcctttgattcataaca 30634229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 35673437 - 35673345
Alignment:
Q  110 tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcct 202  Q
    |||||||||||||||| ||||| ||| || | || |||||||||||| |||||| |||||||||||||||||||| || ||||||||||||||    
T  35673437 tatcttttattcatttatatctctgtgatgattcatagagagaattatacaatctatctttccattgcatttgacttagaaccatggaatcct 35673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 29456372 - 29456284
Alignment:
Q  3 catagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctc 91  Q
    |||||||||| |||| ||||||||| |||||||   |||||||||||||| |||||| |||||||||||||||| |  |||||||||||    
T  29456372 catagttagtcaataagtaaactatagttagttaattggttaggtagttatgagttatttagactaactcacccttgtaaataactctc 29456284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 1175148 - 1175223
Alignment:
Q  140 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 215  Q
    ||||||||| | |||||||||||| |||||| |||| ||||||||||| |||||| ||||||||| |||| |||||    
T  1175148 actcctagaaaaaattacacaatctatcttttcattacatttgacctagaaccatagaatcctttaattcataaca 1175223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 1173513 - 1173610
Alignment:
Q  110 tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgat 207  Q
    |||||||||| || || | |||| || || ||||||||||||||||| |||||| || ||| |||||||||||| ||| ||  |||||||||||||||    
T  1173513 tatcttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattgcatttgatctagaattatggaatcctttgat 1173610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 28395667 - 28395559
Alignment:
Q  105 tttcatatcttttattcatttctatct----ttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatc 200  Q
    |||||||||||||||||||||||||||    |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28395667 tttcatatcttttattcatttctatctatctttgtgatgactcctagagagaattacacaatctatctttccattgcatttgacctaaaaccatggaatc 28395568  T
Q  201 ctttgattc 209  Q
    |||||||||    
T  28395567 ctttgattc 28395559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 42664939 - 42665057
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || |||||  |||||  ||||||    
T  42664939 accatagttagttaatatgtaaactacggttagttggttgtttaggtagttaagagttagttagactaactcacccttataaatagttctcacaattgta 42665038  T
Q  101 ctattttcatatcttttat 119  Q
    |||| ||  ||||||||||    
T  42665039 ctatcttgttatcttttat 42665057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 10032779 - 10032679
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||| ||||| ||||||||||||  ||||||    
T  10032779 accatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagtcggttagactaactca-ccctataaataactctcactattgta 10032681  T
Q  101 ct 102  Q
    ||    
T  10032680 ct 10032679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 4847755 - 4847687
Alignment:
Q  148 agagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaacac 216  Q
    ||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||| |||| ||||||    
T  4847755 agagaattacaaaatctatctttccattacatttgacctagaaccatggaatcctttaattcataacac 4847687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42665237 - 42665175
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagtta 63  Q
    ||||||||||||||||||||||| |||||||||||   || ||||||||||||||||||||||    
T  42665237 accatagttagttaatatgtaaattatggttagttatttgtttaggtagttaagagttagtta 42665175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18812764 - 18812702
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagtta 63  Q
    |||||| |||| |||||||||||||||||||||||   | |||||||||||||||||||||||    
T  18812764 accataattagataatatgtaaactatggttagttacttagttaggtagttaagagttagtta 18812702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 5653358 - 5653307
Alignment:
Q  41 gttaggtagttaagagttagttagactaactcacccctagaaataactctca 92  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||| |||||    
T  5653358 gttaggtagttaggagttagttatactaactcacccctataaataagtctca 5653307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 18807565 - 18807515
Alignment:
Q  13 taatatgtaaactatggttagttggctggttaggtagttaagagttagttag 64  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||||    
T  18807565 taatatgtaaactatggttagttacttggttaggtag-taagagttagttag 18807515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 7e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 15689026 - 15689145
Alignment:
Q  97 tgtactattttc-atatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatg 195  Q
    |||||||||||| || | |||||||||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||    
T  15689026 tgtactattttctatcttttttattcatttctatctttgtgatgactc-tagagagaattacacaatctatctttccattgcatttgacctagaatcatg 15689124  T
Q  196 gaatcctttgattcctaacac 216  Q
    |||||||||||||| ||||||    
T  15689125 gaatcctttgattcataacac 15689145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 30488442 - 30488541
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||    
T  30488442 accatagttagttaatatgtaaattatggtttgttggttggttagatagttaaaagttagttagactaactcacccctataaatagctctcaccattgta 30488541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 9373675 - 9373599
Alignment:
Q  111 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgaccta 187  Q
    ||||||||||||||| ||||||||| || ||||||| ||| ||||||||| || |||||||||||||||||||||||    
T  9373675 atcttttattcatttatatctttgttatgactcctatagaaaattacacattctatctttccattgcatttgaccta 9373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 25050869 - 25050932
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttag 64  Q
    ||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  25050869 accatagttagataatatgtaaactatggttagttacttggttaggtagttaagagttagttag 25050932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 34350452 - 34350341
Alignment:
Q  97 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 196  Q
    ||||||||||   |||||||||| || || | |||| || || ||||||| ||||||||||| || | || ||||| ||| |||||||||| ||||||||    
T  34350452 tgtactatttcactatcttttatacaattgtttcttagtaatgactcctaaagagaattacataaactatttttccgttgtatttgacctagaaccatgg 34350353  T
Q  197 aatcctttgatt 208  Q
    ||||||||||||    
T  34350352 aatcctttgatt 34350341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 26857853 - 26857895
Alignment:
Q  29 gttagttggctggttaggtagttaagagttagttagactaact 71  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  26857853 gttaattggttggttaggtagttaagagttagttagactaact 26857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 29598198 - 29598097
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||| |||| |||||||||||||||||||||||||| |||||||||||| |||| ||    
T  29598198 accatagttagttaatatgtaaactatggttagtttgtaggttaggtggttaggagttagttagactaactcacccctataaataactctcaccattata 29598099  T
Q  101 ct 102  Q
    ||    
T  29598098 ct 29598097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 29924665 - 29924733
Alignment:
Q  140 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 208  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  29924665 actcctagagagaattacacaatctatctttccattgcatttgacctagaactatggaatcctttgatt 29924733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 21633414 - 21633313
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||| ||||||| |||||||||||||||||||||||  |||||||| |||| |||||||||| ||||| ||||| ||| |||||||| ||| |||||||    
T  21633414 accattgttagttgatatgtaaactatggttagttggtaggttaggtggttaggagttagttatactaattcaccactataaataactatcaccattgta 21633315  T
Q  101 ct 102  Q
    ||    
T  21633314 ct 21633313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 21464528 - 21464615
Alignment:
Q  123 tttctatctttgtcataactcctagag--agaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 208  Q
    |||||| |||||| || ||||||||||  |||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  21464528 tttctacctttgtaatgactcctagagagagaattacacaatctatctttccattgcatttgatctagaaccatggaattctttgatt 21464615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 21631215 - 21631122
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||        ||||||||||||||||||||||||| ||||||| |||| || ||||    
T  21631215 accatagttagttgatatgtaaactatggttagttggtaggttagg--------agttagttagactaactcacccctataaataaccctcaccagtgta 21631124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 21631445 - 21631352
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||| ||||||| |||||||||||||||||||||||  |||||||        ||||||||||||||||||||||||| ||||||| |||| |||||||    
T  21631445 accattgttagttgatatgtaaactatggttagttggtaggttagg--------agttagttagactaactcacccctataaataaccctcaccattgta 21631354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 3232944 - 3233025
Alignment:
Q  39 tggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgtactattttcatatcttttatt 120  Q
    |||||||||||||||||||| |||| ||||||||| || || |||||||||||||||||||| | | ||  |||||||||||    
T  3232944 tggttaggtagttaagagtttgttacactaactcatccttataaataactctcatcattgtattttcttattatcttttatt 3233025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 21633176 - 21633093
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctca 92  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||        ||||||||||||||| |||||||||| ||||||| ||||    
T  21633176 accatagttagttgatatgtaaactatggttagttggtaggttag--------gagttagttagactatctcacccctataaataaccctca 21633093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9878362 - 9878298
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagac 66  Q
    ||||||| |||||||||| |||||||||||||||||  | ||||| |||||| |||||||||||||    
T  9878362 accataggtagttaatatataaactatggttagttgtat-gttagatagttaggagttagttagac 9878298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 29856150 - 29856101
Alignment:
Q  39 tggttaggtagttaagagttagttagactaactcacccctagaaataact 88  Q
    |||||||||||||| ||||||||||||| |||||||  ||| ||||||||    
T  29856150 tggttaggtagttaggagttagttagaccaactcactactataaataact 29856101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 1284837 - 1284937
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||  ||||||    
T  1284837 accatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagttagttagactaactca-ccctataaataactatcactattgta 1284935  T
Q  101 ct 102  Q
    ||    
T  1284936 ct 1284937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 44782301 - 44782182
Alignment:
Q  97 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 196  Q
    ||||||||||   |||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  44782301 tgtactatttcattatcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatgg 44782202  T
Q  197 aatcctttgattcctaacac 216  Q
    |||||||| |||| ||||||    
T  44782201 aatcctttaattcataacac 44782182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 46679708 - 46679812
Alignment:
Q  111 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 210  Q
    ||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||     
T  46679708 atcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattca 46679807  T
Q  211 taaca 215  Q
    |||||    
T  46679808 taaca 46679812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 33072760 - 33072845
Alignment:
Q  16 tatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgtact 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| || ||||||||||||  ||||||||    
T  33072760 tatgtaaactatggttagttggttggttaggtagttaagagttagttag-ctgactcacccttataaataactctcactattgtact 33072845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 10653500 - 10653594
Alignment:
Q  4 atagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgtact 102  Q
    |||||||||| ||| ||||| |||||||||||||    |||||| ||||||||||||||||||||||||||||||  ||||| ||||||  ||||||||    
T  10653500 atagttagtttatacgtaaattatggttagttgg----ttaggtggttaagagttagttagactaactcacccctgtaaatagctctcacaattgtact 10653594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 41892098 - 41892178
Alignment:
Q  6 agttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataa 86  Q
    |||||||| ||| || || |||| |||||||| |||||||||||||  |||||||||| ||||||||||||||| ||||||    
T  41892098 agttagttgataggtgaagtatgattagttggttggttaggtagttgggagttagttatactaactcacccctataaataa 41892178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9183 - 9093
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctc 91  Q
    ||||||||||||| |||||| |||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  9183 accatagttagtttatatgtgaactatggttagttgtttggttaggtagttaggagttagttacactaactcacccctataaataactctc 9093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9482 - 9582
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||| |||  ||||||    
T  9482 accatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactca-ccctataaataactatcactattgta 9580  T
Q  101 ct 102  Q
    ||    
T  9581 ct 9582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 11104 - 11204
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||  ||||||    
T  11104 accatagttagttgagatataaactatggttagttggttggttaggtagttaagagttagttagactaactca-ccctataaataactatcactattgta 11202  T
Q  101 ct 102  Q
    ||    
T  11203 ct 11204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9810 - 9910
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctagaaataactctcatcattgta 100  Q
    ||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||| |||  ||||||    
T  9810 accatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactca-ccctataaataactatcactattgta 9908  T
Q  101 ct 102  Q
    ||    
T  9909 ct 9910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28419 - 28492
Alignment:
Q  1 accatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcac 74  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||    
T  28419 accatagttagttgataggtaaactatggttagttggttggttatacagttaagagttagttagattaactcac 28492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University