View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_20 (Length: 586)
Name: NF20633_low_20
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 7 - 571
Target Start/End: Original strand, 2772731 - 2773296
Alignment:
| Q |
7 |
tggagaagcataggtcaaataattataatgttattatgaaggggaagaattttccgatgtgatttttcaaatgatcaccagaaggtttgtttattcggtt |
106 |
Q |
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| T |
2772731 |
tggagaaacataggtcaaataattataatgttattatcaaggggaagaatttgccgatgtgatttttcaaatgatcaccagaaggtttgtttcttcggtt |
2772830 |
T |
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| Q |
107 |
gcttattcattgattggattttgtattgttatatatcatgaattgccattcttgactgactatgttgtatctaaagtgaagtaacttctatgttataatg |
206 |
Q |
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| T |
2772831 |
gcttattcattgattggattttgtattgttatatatcatgaattgccattcttgattgactatgttgtatctaaagtgaagtaacttctatgttataatg |
2772930 |
T |
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| Q |
207 |
tttgagtcattgctatgtattattatattaataattgaaatgttcagacatgagtaatttgaaattgtgttgtgattatgtgaactgtgtatttgtgcct |
306 |
Q |
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| T |
2772931 |
tttgaatcattgctatgtattattatattaataattgaaatgttcagacatgagtaatttgaaattgtgttgtgattatatgaactgtgtatttgtgccg |
2773030 |
T |
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| Q |
307 |
caatgtgtcaaaattgcacgttatgaacatgtctaactcatgtcgatgatagtcctcaaataagaagtgacttcatttgaaattgtgttatgatcatgtg |
406 |
Q |
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| T |
2773031 |
caatgtgtcaaaattgcacgttatgaacatgtctaactcatgtcgatgatagtcctcaaataagaagcgacttcatttgaaattgtgttatgatcatgtg |
2773130 |
T |
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| Q |
407 |
aactatgtatttgtgtcgcaatgtgtcaattgcgcattatgaatatgtctaactcatgttggcgattatcctcaaataa-aagcgacttagaatagaacg |
505 |
Q |
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| T |
2773131 |
aactatgtatttgtgtcgcaatgtgtcaattgcgcattatgaatatgtctaactcatgttggcgattatcctcaaataagaagcggcttagaatagaacg |
2773230 |
T |
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| Q |
506 |
acgaggagagaaagacaagtgttataaatctatgacttagtgtaaaaatgcatatcatgttagtga |
571 |
Q |
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| T |
2773231 |
acgaggagagaaagacaagtgttataaatctatgacttagtgtaaacatgcatatcatgttagtga |
2773296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 33492543 - 33492460
Alignment:
| Q |
221 |
atgtattattatattaataattgaaatgttcagacatgagtaatttgaaattgtgttgtgattatgtgaactgtgtatttgtgc |
304 |
Q |
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| T |
33492543 |
atgtgttattatatgaataactgagatgtccaatcatgagtaacttgaaattgtggtgtgactatgagaatagtgtatttgtgc |
33492460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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