View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_204 (Length: 234)

Name: NF20633_low_204
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_204
NF20633_low_204
[»] chr3 (4 HSPs)
chr3 (87-219)||(49234377-49234509)
chr3 (99-219)||(49233806-49233926)
chr3 (18-96)||(49234533-49234611)
chr3 (18-108)||(49233950-49234039)
[»] chr8 (3 HSPs)
chr8 (35-212)||(14839077-14839255)
chr8 (99-212)||(43228108-43228221)
chr8 (18-113)||(43227991-43228089)
[»] chr7 (1 HSPs)
chr7 (35-212)||(27962435-27962613)
[»] chr2 (3 HSPs)
chr2 (99-208)||(24455872-24455981)
chr2 (99-208)||(1615112-1615221)
chr2 (18-108)||(24455759-24455848)
[»] chr1 (2 HSPs)
chr1 (99-219)||(50862551-50862671)
chr1 (18-108)||(50862438-50862527)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 87 - 219
Target Start/End: Complemental strand, 49234509 - 49234377
Alignment:
Q  87 aggtaattttcttgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattt 186  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  49234509 aggtgattttcttgcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagcagtgttttggtactgcagctgctacatagtggcattt 49234410  T
Q  187 tttcctccctgtgttctgatttgtctatctgtg 219  Q
    |||||||||||||||||||||||||||| ||||    
T  49234409 tttcctccctgtgttctgatttgtctatttgtg 49234377  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 49233926 - 49233806
Alignment:
Q  99 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgt 198  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  49233926 tgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagcagtgttttggtactacagctgctacatagtggcattctttcctccctgt 49233827  T
Q  199 gttctgatttgtctatctgtg 219  Q
    ||| |||||||||||| ||||    
T  49233826 gttttgatttgtctatttgtg 49233806  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 49234611 - 49234533
Alignment:
Q  18 atatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcagagctggttcaaggtaatttt 96  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  49234611 atatgcttatggaatgcgtttctttattttcatatccagatgtgtgcttaattattcagagctggttcaaggtaatttt 49234533  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 49234039 - 49233950
Alignment:
Q  18 atatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcagagctggttcaaggtaattttcttgcataattt 108  Q
    ||||||||||||||||  ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49234039 atatgcttatggaatgtctttcttttttttcatatccatatgtgtgcttaactattcagagctggttcaaggtaattttc-tgcataattt 49233950  T

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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 14839077 - 14839255
Alignment:
Q  35 gtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagttggttttctgcatgtggac 132  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||| |||| |||||    
T  14839077 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcga-catagtttagagctggttttcagcatatggac 14839175  T
Q  133 taatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgtgttctgatttgtct 212  Q
    ||||||| |||| | || |||||||||||||||| ||||||| ||| ||  |||||||||||||  ||||||||||||||    
T  14839176 taatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagttttttcctccctacgttctgatttgtct 14839255  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 43228108 - 43228221
Alignment:
Q  99 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgt 198  Q
    |||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||| | ||||||||| |||| | ||||| ||||||||||||||     
T  43228108 tgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagcagtgtttttgcactgcagcttctacctggtggcgttttttcctccctgc 43228207  T
Q  199 gttctgatttgtct 212  Q
    ||||||||||||||    
T  43228208 gttctgatttgtct 43228221  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 43227991 - 43228089
Alignment:
Q  18 atatgcttatggaat--gcgtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagt 113  Q
    |||||||||||||||  | ||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  43227991 atatgcttatggaatatgtgtttctttattttcatatccagatgtttgtgcttaactattcagagttggttcaaggtaattttc-tgcataatttggagt 43228089  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 27962613 - 27962435
Alignment:
Q  35 gtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagttggttttctgcatgtggac 132  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||| |||| |||||    
T  27962613 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcga-catagtttagagctggttttcagcatatggac 27962515  T
Q  133 taatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgtgttctgatttgtct 212  Q
    ||||||| |||| | || |||||||||||||||| ||||||| ||| ||  |||||||||||||  ||||||||||||||    
T  27962514 taatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagttttttcctccctacgttctgatttgtct 27962435  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 24455872 - 24455981
Alignment:
Q  99 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgt 198  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||| |    
T  24455872 tgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagcagtgttttggtattgcagctgctacgtagtggtattttttcctccctat 24455971  T
Q  199 gttctgattt 208  Q
    ||||||||||    
T  24455972 gttctgattt 24455981  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 1615221 - 1615112
Alignment:
Q  99 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgt 198  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||  ||||||||||||||| |||| ||    
T  1615221 tgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgt 1615122  T
Q  199 gttctgattt 208  Q
    ||||||||||    
T  1615121 gttctgattt 1615112  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 24455759 - 24455848
Alignment:
Q  18 atatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcagagctggttcaaggtaattttcttgcataattt 108  Q
    ||||||||||| |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24455759 atatgcttatgaaatgtgtttctttattttcatatacagatgtgtgcttaactattcagagctggttcaaggtaattttc-tgcataattt 24455848  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 50862551 - 50862671
Alignment:
Q  99 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgt 198  Q
    |||||||||||||| || ||||| |||||||||||||||||||| | ||||  || |||||||||||||||| ||||||||||| |||||||||||||||    
T  50862551 tgcataatttagagctgattttcggcatgtggactaatgtagtgtatcagcactgctttggtactgcagctggtacatagtggcgttttttcctccctgt 50862650  T
Q  199 gttctgatttgtctatctgtg 219  Q
    |||||||||||||||| ||||    
T  50862651 gttctgatttgtctatttgtg 50862671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 50862438 - 50862527
Alignment:
Q  18 atatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcagagctggttcaaggtaattttcttgcataattt 108  Q
    ||||||||||||||||  |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  50862438 atatgcttatggaatgtttttcttcattttcatatccaaatgtgtgcttatctattcagagctggttcaaggtagttttc-tgcataattt 50862527  T

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