View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_21 (Length: 584)

Name: NF20633_low_21
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_21
NF20633_low_21
[»] chr8 (8 HSPs)
chr8 (79-494)||(9963283-9963695)
chr8 (419-492)||(42014307-42014380)
chr8 (17-84)||(9963869-9963936)
chr8 (419-492)||(40866298-40866371)
chr8 (419-492)||(7895152-7895225)
chr8 (419-492)||(44415935-44416008)
chr8 (419-491)||(24864610-24864682)
chr8 (419-491)||(38085948-38086020)
[»] chr3 (9 HSPs)
chr3 (416-491)||(1488010-1488085)
chr3 (417-491)||(2031250-2031324)
chr3 (419-491)||(41552102-41552174)
chr3 (419-491)||(29618314-29618386)
chr3 (415-491)||(35679468-35679544)
chr3 (419-491)||(11580205-11580277)
chr3 (419-491)||(35687871-35687943)
chr3 (419-477)||(52638670-52638728)
chr3 (419-464)||(35692219-35692264)
[»] chr7 (6 HSPs)
chr7 (425-484)||(46972146-46972205)
chr7 (419-494)||(37022192-37022267)
chr7 (417-491)||(34984430-34984504)
chr7 (419-492)||(30034303-30034376)
chr7 (419-492)||(46075151-46075224)
chr7 (419-491)||(25287962-25288034)
[»] chr6 (5 HSPs)
chr6 (419-492)||(3992806-3992879)
chr6 (419-492)||(7432419-7432492)
chr6 (419-492)||(7441936-7442009)
chr6 (417-493)||(7432981-7433057)
chr6 (419-492)||(7425624-7425697)
[»] chr4 (7 HSPs)
chr4 (419-492)||(50968245-50968318)
chr4 (419-493)||(4690133-4690207)
chr4 (419-492)||(31553696-31553769)
chr4 (419-491)||(33871041-33871113)
chr4 (419-492)||(6067671-6067744)
chr4 (419-491)||(34505291-34505363)
chr4 (419-491)||(52818060-52818132)
[»] chr1 (10 HSPs)
chr1 (417-492)||(23057865-23057940)
chr1 (417-492)||(23058052-23058127)
chr1 (419-491)||(37369512-37369584)
chr1 (417-492)||(23057680-23057755)
chr1 (417-492)||(23061981-23062056)
chr1 (423-477)||(23057568-23057622)
chr1 (423-477)||(23061869-23061923)
chr1 (419-492)||(30340910-30340983)
chr1 (419-494)||(43065996-43066076)
chr1 (419-492)||(30320744-30320817)
[»] chr2 (11 HSPs)
chr2 (419-492)||(3197569-3197642)
chr2 (419-494)||(36772395-36772470)
chr2 (419-494)||(36793509-36793584)
chr2 (419-494)||(37559324-37559399)
chr2 (419-492)||(8884449-8884522)
chr2 (419-492)||(34643003-34643076)
chr2 (419-491)||(4713110-4713182)
chr2 (419-491)||(24359793-24359865)
chr2 (419-491)||(36756170-36756242)
chr2 (419-491)||(39082470-39082542)
chr2 (419-491)||(42968152-42968224)
[»] chr5 (1 HSPs)
chr5 (419-492)||(2626071-2626144)


Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 79 - 494
Target Start/End: Complemental strand, 9963695 - 9963283
Alignment:
Q  79 ttattattattacacgttgattatagaatcaaataatatgatgagttttgcttgatttttggaaaccggatgttgcataagaaattatatgcaagttctt 178  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9963695 ttattattattacacgttgattatagaatcagatgatatgatgagttttgcttgatttttggaaaccggatgttgcataagaaattatatgcaagttctt 9963596  T
Q  179 tcattaaaaatactccattttttacgagaatttcaagatctctagaacgccatgatactgaaattattaactagatgcatttgtttttggttttgatcat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  9963595 tcattaaaaatactccattttttacgagaatttcaagatctctagaacgccatgatactgaaatta---actagatgcatttgtttttggttttgatcat 9963499  T
Q  279 actgaaattacagtcttaattagatcagatacattctgtttttgctctacaaaaagaatgttaacatttcaacaatattaattatttgttgtataacaaa 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9963498 actgaaattacagtcttaattagatcagatacattctgtttttgctctacaaaaagaatgttaacatttcaacaatattgattatttgttgtataacaaa 9963399  T
Q  379 taactatcaaaattataaacaaaacaaacttaacatcaaagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgatt 478  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9963398 taactatcaaaattataaacaaaacaaatttaaaatcaaagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgatt 9963299  T
Q  479 ccccgcacctccataa 494  Q
    ||||||||||||||||    
T  9963298 ccccgcacctccataa 9963283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 42014307 - 42014380
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42014307 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 42014380  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 9963936 - 9963869
Alignment:
Q  17 attattggccttacaacactttacctctattttgctaaatgtttcttgagaatatgtaattattatta 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9963936 attattggccttacaacactttacctctattttgctaaatgtttcttgagaatatgtaattattatta 9963869  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 40866371 - 40866298
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  40866371 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 40866298  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 7895225 - 7895152
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||||    
T  7895225 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 7895152  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 44415935 - 44416008
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||||    
T  44415935 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 44416008  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 24864610 - 24864682
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  24864610 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 24864682  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 38085948 - 38086020
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  38085948 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 38086020  T

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Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 1488010 - 1488085
Alignment:
Q  416 aaagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1488010 aaagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 1488085  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 417 - 491
Target Start/End: Original strand, 2031250 - 2031324
Alignment:
Q  417 aagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2031250 aagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 2031324  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 41552102 - 41552174
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41552102 ggggttgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcagctcca 41552174  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 29618314 - 29618386
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  29618314 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 29618386  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 415 - 491
Target Start/End: Original strand, 35679468 - 35679544
Alignment:
Q  415 caaagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  35679468 caaaggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 35679544  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 11580205 - 11580277
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  11580205 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 11580277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 35687871 - 35687943
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| | |||| ||||| ||||||| |||||    
T  35687871 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatggggatcgataccccgcatctcca 35687943  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 52638728 - 52638670
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgat 477  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| |||||    
T  52638728 ggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 52638670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 35692219 - 35692264
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagagg 464  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||    
T  35692219 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 35692264  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 425 - 484
Target Start/End: Complemental strand, 46972205 - 46972146
Alignment:
Q  425 gtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgc 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46972205 gtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgc 46972146  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 419 - 494
Target Start/End: Complemental strand, 37022267 - 37022192
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccataa 494  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||||||    
T  37022267 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccataa 37022192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 491
Target Start/End: Complemental strand, 34984504 - 34984430
Alignment:
Q  417 aagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  34984504 aaggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 34984430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 30034303 - 30034376
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  30034303 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 30034376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 46075224 - 46075151
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  46075224 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 46075151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 25287962 - 25288034
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  25287962 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 25288034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 3992879 - 3992806
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  3992879 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 3992806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 7432492 - 7432419
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  7432492 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 7432419  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 7442009 - 7441936
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  7442009 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcaactccat 7441936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 493
Target Start/End: Complemental strand, 7433057 - 7432981
Alignment:
Q  417 aagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccata 493  Q
    |||||| ||||||||| |||||||||||||||||| |||||| ||||| |||||| ||||| ||||||| |||||||    
T  7433057 aaggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacggggatcgataccccgcatctccata 7432981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 7425697 - 7425624
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| ||||| |||||| |||||| | ||| ||||||| ||||||    
T  7425697 ggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtacggggattgataccccgcatctccat 7425624  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 50968318 - 50968245
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  50968318 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 50968245  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 493
Target Start/End: Complemental strand, 4690207 - 4690133
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccata 493  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||||    
T  4690207 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 4690133  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 31553696 - 31553769
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  31553696 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 31553769  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 491
Target Start/End: Complemental strand, 33871113 - 33871041
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  33871113 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 33871041  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 6067671 - 6067744
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| || ||||||||| ||| ||| ||||||    
T  6067671 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgataccctgcatctccat 6067744  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 34505291 - 34505363
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| || ||||||||| ||| ||| |||||    
T  34505291 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 34505363  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 52818060 - 52818132
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||| ||||| ||||||| |||| || ||||||||| ||| ||| |||||    
T  52818060 ggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctcca 52818132  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 492
Target Start/End: Complemental strand, 23057940 - 23057865
Alignment:
Q  417 aagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||| ||| ||||||    
T  23057940 aagggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccctgcatctccat 23057865  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 492
Target Start/End: Complemental strand, 23058127 - 23058052
Alignment:
Q  417 aagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||||    
T  23058127 aaggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 23058052  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 491
Target Start/End: Complemental strand, 37369584 - 37369512
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  37369584 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 37369512  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 417 - 492
Target Start/End: Complemental strand, 23057755 - 23057680
Alignment:
Q  417 aagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||| || ||| ||| ||||||    
T  23057755 aaggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccat 23057680  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 417 - 492
Target Start/End: Complemental strand, 23062056 - 23061981
Alignment:
Q  417 aagggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||| || ||| ||| ||||||    
T  23062056 aaggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccat 23061981  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 423 - 477
Target Start/End: Complemental strand, 23057622 - 23057568
Alignment:
Q  423 gtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgat 477  Q
    |||||||||| |||||||||||||||||| |||||||||||| | ||||||||||    
T  23057622 gtgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23057568  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 423 - 477
Target Start/End: Complemental strand, 23061923 - 23061869
Alignment:
Q  423 gtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgat 477  Q
    |||||||||| |||||||||||||||||| |||||||||||| | ||||||||||    
T  23061923 gtgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23061869  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 30340983 - 30340910
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| || ||||| ||| ||| ||| ||||||    
T  30340983 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtttgatcccctgcatctccat 30340910  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 494
Target Start/End: Original strand, 43065996 - 43066076
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttc-----gcatgcgagaggcacggggttcgattccccgcacctccataa 494  Q
    |||| |||||||||||||||||||||||||| ||     |||||||||||| |||||| ||||| ||||||| ||||||||    
T  43065996 ggggatgtagctcatatggtagagcgctcgcatcacttagcatgcgagaggtacggggctcgataccccgcatctccataa 43066076  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 30320817 - 30320744
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||| ||||| ||||||| |||| || ||||||||| ||| ||| ||||||    
T  30320817 ggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctccat 30320744  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 3197569 - 3197642
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||    
T  3197569 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggtttgatcccccgcatctccat 3197642  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 419 - 494
Target Start/End: Complemental strand, 36772470 - 36772395
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccataa 494  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||||    
T  36772470 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataa 36772395  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 419 - 494
Target Start/End: Complemental strand, 36793584 - 36793509
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccataa 494  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||||    
T  36793584 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataa 36793509  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 419 - 494
Target Start/End: Complemental strand, 37559399 - 37559324
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccataa 494  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||||    
T  37559399 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataa 37559324  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 8884449 - 8884522
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  8884449 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 8884522  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 34643076 - 34643003
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  34643076 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 34643003  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 419 - 491
Target Start/End: Complemental strand, 4713182 - 4713110
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| || ||||||||| ||| ||| |||||    
T  4713182 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 4713110  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 24359793 - 24359865
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| || ||||||||| ||| ||| |||||    
T  24359793 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 24359865  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 419 - 491
Target Start/End: Complemental strand, 36756242 - 36756170
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| ||||||||| |||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  36756242 ggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 36756170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 39082470 - 39082542
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| || ||||||||| ||| ||| |||||    
T  39082470 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 39082542  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 491
Target Start/End: Original strand, 42968152 - 42968224
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 491  Q
    |||| ||||||||| ||||||||||||| |||| |||||||||||| || ||||||||| ||| ||| |||||    
T  42968152 ggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtacagggttcgataccctgcatctcca 42968224  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 2626144 - 2626071
Alignment:
Q  419 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 492  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  2626144 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 2626071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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