View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_213 (Length: 217)
Name: NF20633_low_213
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_213 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 11488868 - 11489040
Alignment:
| Q |
19 |
attcttcttgtaaaaatgtttatat---ttgttaaatattcttattcctataaacagttgttgaatagagttttacatacagtatttcctttcttcaaaa |
115 |
Q |
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| T |
11488868 |
attcttcttgtaaaaatgtttatataatttgttaaatattcttattcctatatacatttgttgaatagagttttacatacagtatctcctttcttcaaaa |
11488967 |
T |
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| Q |
116 |
tccaaaagttaatcctggttgagagcttaagg-taagttttcttctaatattggtgaaaattgtgtattttgc |
187 |
Q |
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| T |
11488968 |
tgctgaagttaatcctggttgagagcttaaggttaagttttgttctaatattgatgaaaattgtatattttgc |
11489040 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 9842631 - 9842699
Alignment:
| Q |
37 |
tttatatttgttaaatattcttattcctataaacagttgttgaatagagttttacatacagtatttcctttct |
109 |
Q |
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| T |
9842631 |
tttatctttgttaaaaattcttgttcctataaacatttgttgaatag----ttacatacagtacgtcctttct |
9842699 |
T |
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