View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_215 (Length: 217)

Name: NF20633_low_215
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_215
NF20633_low_215
[»] chr5 (29 HSPs)
chr5 (1-217)||(36529122-36529338)
chr5 (45-83)||(1887202-1887240)
chr5 (40-81)||(39147405-39147446)
chr5 (43-83)||(35518687-35518727)
chr5 (39-75)||(39932982-39933018)
chr5 (40-83)||(6496744-6496787)
chr5 (40-82)||(2028080-2028122)
chr5 (40-82)||(6435998-6436040)
chr5 (45-82)||(1642572-1642609)
chr5 (43-84)||(8266076-8266117)
chr5 (40-81)||(11187420-11187461)
chr5 (40-72)||(514272-514304)
chr5 (39-75)||(2914595-2914631)
chr5 (39-75)||(4431684-4431720)
chr5 (39-75)||(5070955-5070991)
chr5 (39-75)||(5846880-5846916)
chr5 (39-75)||(9577547-9577583)
chr5 (39-75)||(18048746-18048782)
chr5 (39-75)||(19712654-19712690)
chr5 (39-75)||(22510572-22510608)
chr5 (39-75)||(32706903-32706939)
chr5 (39-75)||(33629800-33629836)
chr5 (40-84)||(34381896-34381940)
chr5 (39-75)||(34900074-34900110)
chr5 (43-87)||(35712175-35712219)
chr5 (39-75)||(38394200-38394236)
chr5 (39-75)||(39527603-39527639)
chr5 (39-75)||(39630685-39630721)
chr5 (39-75)||(40555241-40555277)
[»] chr1 (29 HSPs)
chr1 (40-87)||(35739844-35739891)
chr1 (40-75)||(51690926-51690961)
chr1 (40-81)||(12068663-12068704)
chr1 (38-75)||(20793509-20793546)
chr1 (40-84)||(29086528-29086572)
chr1 (40-84)||(34596028-34596072)
chr1 (45-84)||(3875800-3875839)
chr1 (40-79)||(10895058-10895097)
chr1 (39-73)||(8768522-8768556)
chr1 (39-84)||(3788210-3788255)
chr1 (40-81)||(12046326-12046367)
chr1 (39-75)||(1395851-1395887)
chr1 (39-75)||(2458660-2458696)
chr1 (43-83)||(3533406-3533446)
chr1 (40-84)||(3552634-3552678)
chr1 (39-75)||(6540537-6540573)
chr1 (39-75)||(7318650-7318686)
chr1 (39-75)||(15170136-15170172)
chr1 (40-84)||(24583947-24583991)
chr1 (40-84)||(24589661-24589705)
chr1 (40-88)||(24681073-24681121)
chr1 (39-75)||(31809642-31809678)
chr1 (40-84)||(33766903-33766947)
chr1 (39-75)||(35369465-35369501)
chr1 (39-75)||(42219660-42219696)
chr1 (39-75)||(45269046-45269082)
chr1 (39-75)||(46436355-46436391)
chr1 (39-75)||(48363444-48363480)
chr1 (39-75)||(50309779-50309815)
[»] chr7 (20 HSPs)
chr7 (40-84)||(30980265-30980309)
chr7 (40-87)||(32416036-32416083)
chr7 (40-84)||(20250323-20250367)
chr7 (45-84)||(25099428-25099467)
chr7 (40-87)||(25658289-25658336)
chr7 (40-87)||(36461280-36461327)
chr7 (39-87)||(34302591-34302637)
chr7 (46-83)||(42521495-42521532)
chr7 (39-75)||(12263822-12263858)
chr7 (39-75)||(17611378-17611414)
chr7 (39-75)||(17833085-17833121)
chr7 (39-75)||(24161806-24161842)
chr7 (39-75)||(31466220-31466256)
chr7 (39-75)||(32827177-32827213)
chr7 (43-83)||(32869795-32869835)
chr7 (39-75)||(37277856-37277892)
chr7 (39-75)||(39430253-39430289)
chr7 (39-75)||(40353707-40353743)
chr7 (39-75)||(40536858-40536894)
chr7 (39-75)||(40704560-40704596)
[»] chr3 (17 HSPs)
chr3 (40-82)||(21652836-21652878)
chr3 (43-82)||(2020773-2020812)
chr3 (39-75)||(9795325-9795361)
chr3 (39-75)||(12569464-12569500)
chr3 (39-75)||(13545928-13545964)
chr3 (39-75)||(14781065-14781101)
chr3 (39-75)||(22926208-22926244)
chr3 (40-84)||(24346324-24346368)
chr3 (45-81)||(33975851-33975887)
chr3 (39-75)||(34816978-34817014)
chr3 (39-75)||(41265683-41265719)
chr3 (39-75)||(43109764-43109800)
chr3 (39-75)||(43185516-43185552)
chr3 (39-75)||(44976473-44976509)
chr3 (39-75)||(47109136-47109172)
chr3 (39-75)||(49102605-49102641)
chr3 (39-75)||(51380102-51380138)
[»] chr4 (19 HSPs)
chr4 (40-81)||(22508171-22508212)
chr4 (40-81)||(50174526-50174567)
chr4 (40-73)||(52157036-52157069)
chr4 (39-75)||(41414140-41414176)
chr4 (40-79)||(34323295-34323334)
chr4 (45-87)||(52743069-52743111)
chr4 (38-75)||(23138207-23138244)
chr4 (38-75)||(23138389-23138426)
chr4 (40-73)||(24569436-24569469)
chr4 (40-73)||(37788049-37788082)
chr4 (42-83)||(44364914-44364955)
chr4 (39-75)||(10125554-10125590)
chr4 (39-75)||(13800502-13800538)
chr4 (39-75)||(22101087-22101123)
chr4 (39-75)||(30649659-30649695)
chr4 (39-75)||(39417971-39418007)
chr4 (39-75)||(52184027-52184063)
chr4 (39-75)||(52397765-52397801)
chr4 (39-75)||(55925833-55925869)
[»] chr8 (14 HSPs)
chr8 (40-84)||(12511130-12511174)
chr8 (42-72)||(38047361-38047391)
chr8 (43-84)||(3098941-3098982)
chr8 (39-84)||(38045077-38045122)
chr8 (39-84)||(45439678-45439723)
chr8 (39-75)||(4174707-4174743)
chr8 (39-75)||(5665843-5665879)
chr8 (39-75)||(15226011-15226047)
chr8 (39-75)||(16861822-16861858)
chr8 (39-75)||(23897852-23897888)
chr8 (39-75)||(28868893-28868929)
chr8 (40-88)||(34865783-34865831)
chr8 (39-75)||(37954243-37954279)
chr8 (39-75)||(41256274-41256310)
[»] chr6 (10 HSPs)
chr6 (40-83)||(32243319-32243362)
chr6 (39-73)||(21139827-21139861)
chr6 (39-84)||(14600507-14600552)
chr6 (39-75)||(3819774-3819810)
chr6 (39-75)||(10629390-10629426)
chr6 (39-75)||(14386635-14386671)
chr6 (39-75)||(16466235-16466271)
chr6 (39-75)||(16524591-16524627)
chr6 (40-84)||(17360762-17360806)
chr6 (39-75)||(29017199-29017235)
[»] chr2 (14 HSPs)
chr2 (40-87)||(26775273-26775320)
chr2 (40-82)||(4841484-4841526)
chr2 (40-82)||(25625613-25625655)
chr2 (40-81)||(42141843-42141884)
chr2 (39-75)||(2048071-2048107)
chr2 (39-75)||(8444071-8444107)
chr2 (39-75)||(9527623-9527659)
chr2 (39-75)||(30549643-30549679)
chr2 (39-75)||(37111075-37111111)
chr2 (39-75)||(37985695-37985731)
chr2 (39-75)||(38993657-38993693)
chr2 (40-84)||(40833631-40833675)
chr2 (39-75)||(41285677-41285713)
chr2 (39-75)||(43521467-43521503)
[»] scaffold0236 (1 HSPs)
scaffold0236 (39-75)||(20443-20479)
[»] scaffold0011 (2 HSPs)
scaffold0011 (39-75)||(1414-1450)
scaffold0011 (39-75)||(13749-13785)
[»] scaffold0009 (1 HSPs)
scaffold0009 (39-75)||(8608-8644)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 36529122 - 36529338
Alignment:
Q  1 agttagcacgaaaagtacgatgtatttgggtgaaatcagaagagaaattatgagtgattttacaaaattatccttcattaatgacattctgaatgaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  36529122 agttagcacgaaaagtacgatgtatttgggtgaaatcagaagagaaattatgaatgattttacaaaattatccttcattaacgacattctgaatgaaaag 36529221  T
Q  101 aagagaaaatgttgtaaattacacaataaatgatcatgtttatatagtttgttgtgctaacaaatttcttagttttctaagcaacttactgacctaaata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| ||    
T  36529222 aagagaaaatgttgtaaattacacaataaatgatcatgtttatatagtttgttgtgataacaaatttcttagttttctaaccaacttactaacctaacta 36529321  T
Q  201 atactaataatcattcc 217  Q
    ||| |||||||||||||    
T  36529322 atattaataatcattcc 36529338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 1887202 - 1887240
Alignment:
Q  45 aaattatgagtgattttacaaaattatccttcattaatg 83  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  1887202 aaattatgagttattttacaaaattatccttcattaatg 1887240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 39147446 - 39147405
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaa 81  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  39147446 aagagaaattatgattcattttacaaaattatccttcattaa 39147405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 35518727 - 35518687
Alignment:
Q  43 agaaattatgagtgattttacaaaattatccttcattaatg 83  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  35518727 agaaattatgaatgattttacaaaattattcttcattaatg 35518687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 39933018 - 39932982
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    ||||||||||||||||| |||||||||||||||||||    
T  39933018 gaagagaaattatgagttattttacaaaattatcctt 39932982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 6496744 - 6496787
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatg 83  Q
    ||||||||||||| || |||||| ||||||||||||||||||||    
T  6496744 aagagaaattatgtgttattttagaaaattatccttcattaatg 6496787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 2028080 - 2028122
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaat 82  Q
    ||||||||||||| |||||||||||||||| || |||||||||    
T  2028080 aagagaaattatgtgtgattttacaaaattgtctttcattaat 2028122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 6435998 - 6436040
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaat 82  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||    
T  6435998 aagagaaattatgagtaattatacaaaattatcctttattaat 6436040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 1642609 - 1642572
Alignment:
Q  45 aaattatgagtgattttacaaaattatccttcattaat 82  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  1642609 aaattatgagttattttacaaaattatcattcattaat 1642572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 8266076 - 8266117
Alignment:
Q  43 agaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||||| ||||||||||| ||||||||| |||||||||||    
T  8266076 agaaattacgagtgattttaaaaaattatctttcattaatga 8266117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 11187461 - 11187420
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaa 81  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  11187461 aagagaaattacaagtgatcttacaaaattatccttcattaa 11187420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 514304 - 514272
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatc 72  Q
    |||||||||||||||| ||||||||||||||||    
T  514304 aagagaaattatgagtcattttacaaaattatc 514272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 2914631 - 2914595
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  2914631 gaagagaaattatgagttgttttacaaaattatcctt 2914595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 4431720 - 4431684
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  4431720 gaagagaaattatgagttgttttacaaaattatcctt 4431684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 5070991 - 5070955
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  5070991 gaagagaaattatgagttgttttacaaaattatcctt 5070955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 5846880 - 5846916
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  5846880 gaagagaaattatgagttgttttacaaaattatcctt 5846916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 9577547 - 9577583
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  9577547 gaagagaaattatgagttgttttacaaaattatcctt 9577583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 18048782 - 18048746
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  18048782 gaagagaaattatgagttgttttacaaaattatcctt 18048746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 19712690 - 19712654
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  19712690 gaagagaaattatgagttgttttacaaaattatcctt 19712654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 22510608 - 22510572
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  22510608 gaagagaaattatgagttgttttacaaaattatcctt 22510572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 32706939 - 32706903
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  32706939 gaagagaaattatgagttgttttacaaaattatcctt 32706903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 33629800 - 33629836
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  33629800 gaagagaaattatgagttgttttacaaaattatcctt 33629836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 34381896 - 34381940
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||| ||||||||| ||||||||||||||||||| || |||||    
T  34381896 aagagatattatgagttattttacaaaattatccttaataaatga 34381940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 34900074 - 34900110
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  34900074 gaagagaaattatgagttgttttacaaaattatcctt 34900110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 35712219 - 35712175
Alignment:
Q  43 agaaattatgagtgattttacaaaattatccttcattaatgacat 87  Q
    ||||||||||| |||||| |||||||||||| | |||||||||||    
T  35712219 agaaattatgaatgatttgacaaaattatcccttattaatgacat 35712175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 38394200 - 38394236
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  38394200 gaagagaaattatgagttgttttacaaaattatcctt 38394236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 39527639 - 39527603
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  39527639 gaagagaaattatgagttgttttacaaaattatcctt 39527603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 39630721 - 39630685
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  39630721 gaagagaaattatgagttgttttacaaaattatcctt 39630685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 40555277 - 40555241
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  40555277 gaagagaaattatgagttgttttacaaaattatcctt 40555241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 35739844 - 35739891
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatgacat 87  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  35739844 aagagaaattatgattgattttacaaaattatcctttattaatgacat 35739891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 51690926 - 51690961
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatcctt 75  Q
    ||||||||||||||||||||||||||||||||||||    
T  51690926 aagagaaattatgagtgattttacaaaattatcctt 51690961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 12068704 - 12068663
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaa 81  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  12068704 aagagaaattatgtgttattttacaaaattatccttcattaa 12068663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 20793546 - 20793509
Alignment:
Q  38 agaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20793546 agaagagaaattatgagttattttacaaaattatcctt 20793509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 29086528 - 29086572
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||| || || ||||||||||||||||||||||||||||||||    
T  29086528 aagagatatcataagtgattttacaaaattatccttcattaatga 29086572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 34596028 - 34596072
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||    
T  34596028 aagagaaattataagtgattttacaaaattatcccttattaatga 34596072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 3875839 - 3875800
Alignment:
Q  45 aaattatgagtgattttacaaaattatccttcattaatga 84  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  3875839 aaattataagtaattttacaaaattatccttcattaatga 3875800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 10895058 - 10895097
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcatt 79  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  10895058 aagagaaattatgaattattttacaaaattatccttcatt 10895097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 8768522 - 8768556
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcc 73  Q
    ||||||||||||||||| |||||||||||||||||    
T  8768522 gaagagaaattatgagttattttacaaaattatcc 8768556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 3788255 - 3788210
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||||||||||||||  |||||||||||||||||| || |||||    
T  3788255 gaagagaaattatgagttgttttacaaaattatccttaataaatga 3788210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 12046367 - 12046326
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaa 81  Q
    ||||||||||||| || ||||||||||||||| |||||||||    
T  12046367 aagagaaattatgtgttattttacaaaattattcttcattaa 12046326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 1395887 - 1395851
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  1395887 gaagagaaattatgagttgttttacaaaattatcctt 1395851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 2458696 - 2458660
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  2458696 gaagagaaattatgagttgttttacaaaattatcctt 2458660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 3533446 - 3533406
Alignment:
Q  43 agaaattatgagtgattttacaaaattatccttcattaatg 83  Q
    ||||||||| ||| |||||||||||||| ||||||||||||    
T  3533446 agaaattataagtaattttacaaaattacccttcattaatg 3533406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 3552634 - 3552678
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||| ||||||||| ||||||||||||||||||| || |||||    
T  3552634 aagagatattatgagttattttacaaaattatccttaataaatga 3552678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 6540537 - 6540573
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  6540537 gaagagaaattatgagttgttttacaaaattatcctt 6540573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 7318650 - 7318686
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  7318650 gaagagaaattatgagttgttttacaaaattatcctt 7318686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 15170136 - 15170172
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  15170136 gaagagaaattatgagttgttttacaaaattatcctt 15170172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 24583991 - 24583947
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||| ||||||||| ||||||||||||||||||| || |||||    
T  24583991 aagagatattatgagttattttacaaaattatccttaataaatga 24583947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 24589705 - 24589661
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||| ||||||||| ||||||||||||||||||| || |||||    
T  24589705 aagagatattatgagttattttacaaaattatccttaataaatga 24589661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 24681121 - 24681073
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatgacatt 88  Q
    |||||||||||||| | ||| |||| ||||||||||||| |||||||||    
T  24681121 aagagaaattatgaattattgtacacaattatccttcatcaatgacatt 24681073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 31809678 - 31809642
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  31809678 gaagagaaattatgagttgttttacaaaattatcctt 31809642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 33766903 - 33766947
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||| ||||||| ||| |||||| |||||||||||||||||||||    
T  33766903 aagaaaaattataagtcattttataaaattatccttcattaatga 33766947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 35369465 - 35369501
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  35369465 gaagagaaattatgagttgttttacaaaattatcctt 35369501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 42219660 - 42219696
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  42219660 gaagagaaattatgagttgttttacaaaattatcctt 42219696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 45269046 - 45269082
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  45269046 gaagagaaattatgagttgttttacaaaattatcctt 45269082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 46436355 - 46436391
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  46436355 gaagagaaattatgagttgttttacaaaattatcctt 46436391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 48363444 - 48363480
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  48363444 gaagagaaattatgagttgttttacaaaattatcctt 48363480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 50309779 - 50309815
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  50309779 gaagagaaattatgagttgttttacaaaattatcctt 50309815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 30980265 - 30980309
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||    
T  30980265 aagaaaaattatgagtaattttacaaaattatccttcattaatga 30980309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 32416083 - 32416036
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatgacat 87  Q
    |||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  32416083 aagagaaattatgaatgattttataaaattatcattcattaatgacat 32416036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 20250367 - 20250323
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||    
T  20250367 aagagaaattctaagtaattttacaaaattatccttcattaatga 20250323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 25099428 - 25099467
Alignment:
Q  45 aaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  25099428 aaattatgagagattttacaaaattatccatcattaatga 25099467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 25658289 - 25658336
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatgacat 87  Q
    ||||||||||||| ||||||||| |||||||| | |||||||||||||    
T  25658289 aagagaaattatgtgtgattttaaaaaattattcatcattaatgacat 25658336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 36461327 - 36461280
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatgacat 87  Q
    |||||||||||||||| | ||||||||||||||| | |||||||||||    
T  36461327 aagagaaattatgagttactttacaaaattatcccttattaatgacat 36461280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 34302637 - 34302591
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatccttcattaatgacat 87  Q
    ||||| |||||||||||| |||||||||||||||  |||||||||||||    
T  34302637 gaagaaaaattatgagtggttttacaaaattatc--tcattaatgacat 34302591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 42521532 - 42521495
Alignment:
Q  46 aattatgagtgattttacaaaattatccttcattaatg 83  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  42521532 aattaggagtaattttacaaaattatccttcattaatg 42521495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 12263858 - 12263822
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  12263858 gaagagaaattatgagttgttttacaaaattatcctt 12263822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 17611378 - 17611414
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  17611378 gaagagaaattatgagttgttttacaaaattatcctt 17611414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 17833121 - 17833085
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  17833121 gaagagaaattatgagttgttttacaaaattatcctt 17833085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 24161842 - 24161806
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  24161842 gaagagaaattatgagttgttttacaaaattatcctt 24161806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 31466256 - 31466220
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  31466256 gaagagaaattatgagttgttttacaaaattatcctt 31466220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 32827177 - 32827213
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  32827177 gaagagaaattatgagttgttttacaaaattatcctt 32827213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 32869835 - 32869795
Alignment:
Q  43 agaaattatgagtgattttacaaaattatccttcattaatg 83  Q
    ||||| |||||||||||||||||||| || |||||||||||    
T  32869835 agaaactatgagtgattttacaaaataattcttcattaatg 32869795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 37277892 - 37277856
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  37277892 gaagagaaattatgagttgttttacaaaattatcctt 37277856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 39430289 - 39430253
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  39430289 gaagagaaattatgagttgttttacaaaattatcctt 39430253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 40353707 - 40353743
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  40353707 gaagagaaattatgagttgttttacaaaattatcctt 40353743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 40536858 - 40536894
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  40536858 gaagagaaattatgagttgttttacaaaattatcctt 40536894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 40704596 - 40704560
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  40704596 gaagagaaattatgagttgttttacaaaattatcctt 40704560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 21652836 - 21652878
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaat 82  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  21652836 aagagaaattatgaatgattttacaaaattatcctttattaat 21652878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 2020812 - 2020773
Alignment:
Q  43 agaaattatgagtgattttacaaaattatccttcattaat 82  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  2020812 agaaattatgagtgatttttcaaaattatccctcattaat 2020773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 9795361 - 9795325
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  9795361 gaagagaaattatgagttgttttacaaaattatcctt 9795325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 12569500 - 12569464
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  12569500 gaagagaaattatgagttgttttacaaaattatcctt 12569464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 13545964 - 13545928
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  13545964 gaagagaaattatgagttgttttacaaaattatcctt 13545928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 14781101 - 14781065
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  14781101 gaagagaaattatgagttgttttacaaaattatcctt 14781065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 22926244 - 22926208
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  22926244 gaagagaaattatgagttgttttacaaaattatcctt 22926208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 24346368 - 24346324
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||||||||| | |||||||| ||||||||||||||| |||||    
T  24346368 aagagaaattataaatgattttataaaattatccttcataaatga 24346324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 33975887 - 33975851
Alignment:
Q  45 aaattatgagtgattttacaaaattatccttcattaa 81  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  33975887 aaattatgagttattttacaaaattatcgttcattaa 33975851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 34816978 - 34817014
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  34816978 gaagagaaattatgagttgttttacaaaattatcctt 34817014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 41265719 - 41265683
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  41265719 gaagagaaattatgagttgttttacaaaattatcctt 41265683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 43109800 - 43109764
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  43109800 gaagagaaattatgagttgttttacaaaattatcctt 43109764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 43185552 - 43185516
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  43185552 gaagagaaattatgagttgttttacaaaattatcctt 43185516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 44976509 - 44976473
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  44976509 gaagagaaattatgagttgttttacaaaattatcctt 44976473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 47109136 - 47109172
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  47109136 gaagagaaattatgagttgttttacaaaattatcctt 47109172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 49102641 - 49102605
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  49102641 gaagagaaattatgagttgttttacaaaattatcctt 49102605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 51380102 - 51380138
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  51380102 gaagagaaattatgagttgttttacaaaattatcctt 51380138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 22508212 - 22508171
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaa 81  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  22508212 aagagaaattatgagttattttacaaaaatatccttcattaa 22508171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 50174567 - 50174526
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaa 81  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  50174567 aagagaaattataagtcattttacaaaattatccttcattaa 50174526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 52157036 - 52157069
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatcc 73  Q
    ||||||||||||||||||||||||||||||||||    
T  52157036 aagagaaattatgagtgattttacaaaattatcc 52157069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 41414140 - 41414176
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    ||||||||||||||||| |||||||||||||||||||    
T  41414140 gaagagaaattatgagttattttacaaaattatcctt 41414176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 34323295 - 34323334
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcatt 79  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  34323295 aagagaagttatgagttattttacaaaattatccttcatt 34323334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 52743111 - 52743069
Alignment:
Q  45 aaattatgagtgattttacaaaattatccttcattaatgacat 87  Q
    |||||||||||||||||||||||| ||| || |||||||||||    
T  52743111 aaattatgagtgattttacaaaatgatcatttattaatgacat 52743069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 23138244 - 23138207
Alignment:
Q  38 agaagagaaattatgagtgattttacaaaattatcctt 75  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  23138244 agaagagaaattatgagttgttttacaaaattatcctt 23138207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 23138426 - 23138389
Alignment:
Q  38 agaagagaaattatgagtgattttacaaaattatcctt 75  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  23138426 agaagagaaattatgagttgttttacaaaattatcctt 23138389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 24569469 - 24569436
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatcc 73  Q
    |||||| |||||||||||||||||||||||||||    
T  24569469 aagagacattatgagtgattttacaaaattatcc 24569436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 37788082 - 37788049
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatcc 73  Q
    |||||||||||||||| |||||||||||||||||    
T  37788082 aagagaaattatgagttattttacaaaattatcc 37788049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 44364914 - 44364955
Alignment:
Q  42 gagaaattatgagtgattttacaaaattatccttcattaatg 83  Q
    |||||||||||||| | |||||||||||||| ||||||||||    
T  44364914 gagaaattatgagtaactttacaaaattatctttcattaatg 44364955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 10125554 - 10125590
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  10125554 gaagagaaattatgagttgttttacaaaattatcctt 10125590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 13800538 - 13800502
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  13800538 gaagagaaattatgagttgttttacaaaattatcctt 13800502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 22101123 - 22101087
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  22101123 gaagagaaattatgagttgttttacaaaattatcctt 22101087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 30649659 - 30649695
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  30649659 gaagagaaattatgagttgttttacaaaattatcctt 30649695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 39418007 - 39417971
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  39418007 gaagagaaattatgagttgttttacaaaattatcctt 39417971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 52184063 - 52184027
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  52184063 gaagagaaattatgagttgttttacaaaattatcctt 52184027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 52397765 - 52397801
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  52397765 gaagagaaattatgagttgttttacaaaattatcctt 52397801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 55925869 - 55925833
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  55925869 gaagagaaattatgagttgttttacaaaattatcctt 55925833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 12511130 - 12511174
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||||    
T  12511130 aagagatattataagtcattttacaaaattatccttcattaatga 12511174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 72
Target Start/End: Original strand, 38047361 - 38047391
Alignment:
Q  42 gagaaattatgagtgattttacaaaattatc 72  Q
    |||||||||||||||||||||||||||||||    
T  38047361 gagaaattatgagtgattttacaaaattatc 38047391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 3098982 - 3098941
Alignment:
Q  43 agaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||||||||| |||||||||||||||||| || |||||||    
T  3098982 agaaattatgagggattttacaaaattatccctcgttaatga 3098941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 38045122 - 38045077
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||||||||||||||  |||||||||||||||||| || |||||    
T  38045122 gaagagaaattatgagttgttttacaaaattatccttaataaatga 38045077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 45439723 - 45439678
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||||||||||||||  |||||||||||||||||| || |||||    
T  45439723 gaagagaaattatgagttgttttacaaaattatccttaatgaatga 45439678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 4174743 - 4174707
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    ||||||||||||||||  |||||||||||||||||||    
T  4174743 gaagagaaattatgagctattttacaaaattatcctt 4174707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 5665879 - 5665843
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  5665879 gaagagaaattatgagttgttttacaaaattatcctt 5665843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 15226047 - 15226011
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  15226047 gaagagaaattatgagttgttttacaaaattatcctt 15226011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 16861822 - 16861858
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  16861822 gaagagaaattatgagttgttttacaaaattatcctt 16861858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 23897888 - 23897852
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  23897888 gaagagaaattatgagttgttttacaaaattatcctt 23897852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 28868929 - 28868893
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  28868929 gaagagaaattatgagttgttttacaaaattatcctt 28868893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 34865831 - 34865783
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatgacatt 88  Q
    |||||| ||||||||| ||||||||||||| ||||| || |||||||||    
T  34865831 aagagatattatgagttattttacaaaattgtccttaataaatgacatt 34865783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 37954243 - 37954279
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  37954243 gaagagaaattataagttattttacaaaattatcctt 37954279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 41256274 - 41256310
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  41256274 gaagagaaattatgagttgttttacaaaattatcctt 41256310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 32243362 - 32243319
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatg 83  Q
    |||||||||||| | | |||||||||||||||||||||||||||    
T  32243362 aagagaaattataaataattttacaaaattatccttcattaatg 32243319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 21139827 - 21139861
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcc 73  Q
    ||||||||||||||||| |||||||||||||||||    
T  21139827 gaagagaaattatgagttattttacaaaattatcc 21139861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 14600507 - 14600552
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||||||||||||||  |||||||||||||||||| || |||||    
T  14600507 gaagagaaattatgagttgttttacaaaattatccttaataaatga 14600552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 3819810 - 3819774
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  3819810 gaagagaaattatgagttgttttacaaaattatcctt 3819774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 10629390 - 10629426
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  10629390 gaagagaaattatgagttgttttacaaaattatcctt 10629426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 14386671 - 14386635
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  14386671 gaagagaaattatgagttgttttacaaaattatcctt 14386635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 16466235 - 16466271
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  16466235 gaagagaaattatgagttgttttacaaaattatcctt 16466271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 16524591 - 16524627
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  16524591 gaagagaaattatgagttgttttacaaaattatcctt 16524627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 17360806 - 17360762
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||| ||||||||| ||||||||||||||||||| || |||||    
T  17360806 aagagatattatgagttattttacaaaattatccttaataaatga 17360762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 29017235 - 29017199
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  29017235 gaagagaaattatgagttgttttacaaaattatcctt 29017199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 26775320 - 26775273
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatgacat 87  Q
    |||| |||||||||||||||||||||| |||||| | |||||||||||    
T  26775320 aagataaattatgagtgattttacaaatttatcccttattaatgacat 26775273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 4841484 - 4841526
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaat 82  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||    
T  4841484 aagagaaattatcagttattttacaaaattattcttcattaat 4841526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 25625655 - 25625613
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaat 82  Q
    |||||||||||||||| |||||  |||||||||||||||||||    
T  25625655 aagagaaattatgagttatttttaaaaattatccttcattaat 25625613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 42141843 - 42141884
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaa 81  Q
    |||| ||||||| ||| |||||||||||||||||||||||||    
T  42141843 aagataaattataagtcattttacaaaattatccttcattaa 42141884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 2048071 - 2048107
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  2048071 gaagagaaattatgagttgttttacaaaattatcctt 2048107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 8444071 - 8444107
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  8444071 gaagagaaattatgagttgttttacaaaattatcctt 8444107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 9527659 - 9527623
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  9527659 gaagagaaattatgagttgttttacaaaattatcctt 9527623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 30549643 - 30549679
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  30549643 gaagagaaattatgagttgttttacaaaattatcctt 30549679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 37111075 - 37111111
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  37111075 gaagagaaattatgagttgttttacaaaattatcctt 37111111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 37985731 - 37985695
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  37985731 gaagagaaattatgagttgttttacaaaattatcctt 37985695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 38993693 - 38993657
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  38993693 gaagagaaattatgagttgttttacaaaattatcctt 38993657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 40833675 - 40833631
Alignment:
Q  40 aagagaaattatgagtgattttacaaaattatccttcattaatga 84  Q
    |||||| ||||||||| ||||||||||||||||||| || |||||    
T  40833675 aagagatattatgagttattttacaaaattatccttaataaatga 40833631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 41285677 - 41285713
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  41285677 gaagagaaattatgagttgttttacaaaattatcctt 41285713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 43521467 - 43521503
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  43521467 gaagagaaattatgagttgttttacaaaattatcctt 43521503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 20479 - 20443
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  20479 gaagagaaattatgagttgttttacaaaattatcctt 20443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 1450 - 1414
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  1450 gaagagaaattatgagttgttttacaaaattatcctt 1414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 13749 - 13785
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  13749 gaagagaaattatgagttgttttacaaaattatcctt 13785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 8644 - 8608
Alignment:
Q  39 gaagagaaattatgagtgattttacaaaattatcctt 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  8644 gaagagaaattatgagttgttttacaaaattatcctt 8608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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