View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_216 (Length: 216)
Name: NF20633_low_216
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_216 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 50361782 - 50361596
Alignment:
| Q |
17 |
atttattccttaaaacaaatcaataaaataaagcacattcgaaaaatcaatagcttgttggtattaagcataagtataacattaatttatacacttctca |
116 |
Q |
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| T |
50361782 |
atttattccttaaaacaaatcaataaaataaagcacattcgaaaaatcaatagcttgttggtattaagcataagtataacattaatttatacacttctca |
50361683 |
T |
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| Q |
117 |
atgtgacattgaattttcaagagcttcaagttctttaggagcagaacatctaaataatttacttacctcaaattgaatcactctctg |
203 |
Q |
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| T |
50361682 |
atgtgacattgaattttcaagagcttcaagttctttaggagcagaacatctgtgtaatttacttacctcaaattgaatcactctctg |
50361596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 12604916 - 12605008
Alignment:
| Q |
111 |
ttctcaatgtgacattgaattttcaagagcttcaagttctttaggagcagaacatctaaataatttacttacctcaaattgaatcactctctg |
203 |
Q |
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| T |
12604916 |
ttctcaatctgacattgaattttgaagaactttattttctttaggagcagaacatctacgtaatttacatacctcaaatataatcactctctg |
12605008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 10451993 - 10451901
Alignment:
| Q |
111 |
ttctcaatgtgacattgaattttcaagagcttcaagttctttaggagcagaacatctaaataatttacttacctcaaattgaatcactctctg |
203 |
Q |
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| T |
10451993 |
ttctcaatgtgacattgaattttgaagaactttattttctttaggagcagaacatctacgtaatttacatacctcaaatataatcactctctg |
10451901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 30997828 - 30997884
Alignment:
| Q |
147 |
ttctttaggagcagaacatctaaataatttacttacctcaaattgaatcactctctg |
203 |
Q |
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| T |
30997828 |
ttctttaagagcagaacatctacgtaatttacatacctcaaatataatcactctctg |
30997884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 13862300 - 13862346
Alignment:
| Q |
72 |
tgttggtattaagcataagtataacattaatttatacacttctcaat |
118 |
Q |
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| T |
13862300 |
tgttggtattaagcataagtacagtattaatttatacagttctcaat |
13862346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 52527596 - 52527642
Alignment:
| Q |
72 |
tgttggtattaagcataagtataacattaatttatacacttctcaat |
118 |
Q |
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| T |
52527596 |
tgttggtattaagcataagtacagtattaatttatacagttctcaat |
52527642 |
T |
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