View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_224 (Length: 205)
Name: NF20633_low_224
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_224 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 37629904 - 37629759
Alignment:
| Q |
1 |
cctctatcaatgttggtgctgggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacg |
100 |
Q |
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| T |
37629904 |
cctctatcaatgttggtgctgggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacg |
37629805 |
T |
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| Q |
101 |
gtgttccacacttttgtacttaccatttgttattacctgtcacatt |
146 |
Q |
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| T |
37629804 |
gtgttccacacttttgtacttgccatttgttattacctgtcacatt |
37629759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 192
Target Start/End: Complemental strand, 37629739 - 37629708
Alignment:
| Q |
161 |
ttaatgcttgatatgaatcatttgttgttgat |
192 |
Q |
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| T |
37629739 |
ttaatgcttgatatgaatcatttgttgttgat |
37629708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 36871184 - 36871303
Alignment:
| Q |
21 |
gggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacggtgttccacacttttgtact |
120 |
Q |
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| T |
36871184 |
gggtaaatgacagcatcactcccagggttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtact |
36871283 |
T |
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| Q |
121 |
taccatttgttattacctgt |
140 |
Q |
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| T |
36871284 |
tgccatttgttattacctgt |
36871303 |
T |
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