View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_227 (Length: 203)

Name: NF20633_low_227
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_227
NF20633_low_227
[»] chr6 (7 HSPs)
chr6 (81-189)||(16404204-16404312)
chr6 (21-60)||(34828330-34828370)
chr6 (21-55)||(10778864-10778898)
chr6 (28-56)||(9987221-9987249)
chr6 (19-59)||(12808891-12808931)
chr6 (21-57)||(28592688-28592724)
chr6 (23-59)||(35110080-35110116)
[»] chr2 (11 HSPs)
chr2 (20-60)||(42475108-42475148)
chr2 (17-59)||(27889309-27889351)
chr2 (19-60)||(25274827-25274868)
chr2 (21-60)||(24393269-24393308)
chr2 (21-60)||(31397787-31397826)
chr2 (18-52)||(36193950-36193984)
chr2 (23-52)||(15227808-15227837)
chr2 (21-54)||(39384166-39384199)
chr2 (21-57)||(6765634-6765670)
chr2 (17-57)||(19549456-19549496)
chr2 (17-57)||(35327376-35327416)
[»] chr5 (6 HSPs)
chr5 (22-59)||(1257153-1257190)
chr5 (19-56)||(2705518-2705555)
chr5 (21-60)||(5150080-5150120)
chr5 (21-57)||(12611036-12611072)
chr5 (21-57)||(18391624-18391660)
chr5 (17-57)||(31708147-31708187)
[»] chr7 (6 HSPs)
chr7 (21-57)||(24225982-24226018)
chr7 (21-59)||(24839512-24839550)
chr7 (17-58)||(34722020-34722062)
chr7 (19-55)||(6768710-6768746)
chr7 (18-46)||(30753747-30753775)
chr7 (21-57)||(35165557-35165593)
[»] scaffold0160 (1 HSPs)
scaffold0160 (17-60)||(22931-22974)
[»] chr8 (6 HSPs)
chr8 (21-60)||(32944838-32944877)
chr8 (19-57)||(8078101-8078139)
chr8 (21-59)||(9655996-9656034)
chr8 (21-59)||(34073754-34073792)
chr8 (17-58)||(41603081-41603122)
chr8 (23-59)||(7404804-7404840)
[»] chr3 (9 HSPs)
chr3 (17-60)||(22722422-22722465)
chr3 (17-60)||(28244102-28244145)
chr3 (17-56)||(42074123-42074162)
chr3 (17-60)||(52575967-52576010)
chr3 (23-60)||(4947824-4947861)
chr3 (23-60)||(15507269-15507306)
chr3 (23-59)||(31463510-31463546)
chr3 (23-59)||(35557119-35557155)
chr3 (17-57)||(38559897-38559937)
[»] chr1 (10 HSPs)
chr1 (17-60)||(11410647-11410690)
chr1 (21-59)||(29233973-29234011)
chr1 (17-55)||(45701348-45701386)
chr1 (23-60)||(25984028-25984065)
chr1 (21-58)||(29251778-29251815)
chr1 (19-56)||(29798118-29798155)
chr1 (19-60)||(31426783-31426824)
chr1 (19-59)||(9398412-9398452)
chr1 (19-59)||(17221519-17221559)
chr1 (19-59)||(34083359-34083399)
[»] scaffold0008 (1 HSPs)
scaffold0008 (21-55)||(119201-119235)
[»] chr4 (9 HSPs)
chr4 (21-59)||(7739209-7739247)
chr4 (21-55)||(9028075-9028109)
chr4 (21-59)||(29568610-29568648)
chr4 (23-56)||(11198790-11198823)
chr4 (19-60)||(22164267-22164308)
chr4 (21-58)||(44221471-44221508)
chr4 (21-57)||(9783923-9783959)
chr4 (21-57)||(29681458-29681494)
chr4 (21-57)||(37735813-37735849)
[»] scaffold0012 (1 HSPs)
scaffold0012 (18-46)||(118840-118868)


Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 16404312 - 16404204
Alignment:
Q  81 aaaattgctagaatcttaactcttaaatcaatattcttaaagaatggccttcctcacttgcgtctatcaccttaatgaaagctatttgtcatgtatgtca 180  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  16404312 aaaattgctagaatcttaactcttaaatcaatattcttaaacactggccttcctcacttgcgtctatcaccttaatgaaagccgtttgtcatgtatgtca 16404213  T
Q  181 tgtgattgt 189  Q
    |||||||||    
T  16404212 tgtgattgt 16404204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 34828330 - 34828370
Alignment:
Q  21 acaatgcataa-aatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  34828330 acaatgcataataatatgtaaggtctgaggttcgaaccccg 34828370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 10778864 - 10778898
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaa 55  Q
    ||||||||||| |||||||||||||||||||||||    
T  10778864 acaatgcataatatatgtaaggtctgaggttcgaa 10778898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 9987221 - 9987249
Alignment:
Q  28 ataaaatatgtaaggtctgaggttcgaac 56  Q
    |||||||||||||||||||||||||||||    
T  9987221 ataaaatatgtaaggtctgaggttcgaac 9987249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 12808891 - 12808931
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  12808891 gaacaatgcataatatatgcaaggtctggggttcgaacccc 12808931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 28592724 - 28592688
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  28592724 acaatgcataatatatgtaaggtctggggttcgaacc 28592688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 35110080 - 35110116
Alignment:
Q  23 aatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  35110080 aatgcataatatatgtaaggtttgaggttcgaacccc 35110116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 42475148 - 42475108
Alignment:
Q  20 aacaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  42475148 aacaatgcataaaatatgcaaggtctgaggttcgaaccccg 42475108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 27889309 - 27889351
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  27889309 atgaacaatgcataaaatatgtaaggtttgaggttcaaacccc 27889351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 25274868 - 25274827
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  25274868 gaacaatgcataatatatgtaaggtctggggttcgaaccccg 25274827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 24393269 - 24393308
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  24393269 acaatgcataatatatgcaaggtctgaggttcgaaccccg 24393308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 31397826 - 31397787
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  31397826 acaatgcataaaatatgtaaggtccgagattcgaaccccg 31397787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 36193984 - 36193950
Alignment:
Q  18 tgaacaatgcataaaatatgtaaggtctgaggttc 52  Q
    |||||||||||||||||||| ||||||||||||||    
T  36193984 tgaacaatgcataaaatatgcaaggtctgaggttc 36193950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 15227837 - 15227808
Alignment:
Q  23 aatgcataaaatatgtaaggtctgaggttc 52  Q
    ||||||||||||||||||||||||||||||    
T  15227837 aatgcataaaatatgtaaggtctgaggttc 15227808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 39384199 - 39384166
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcga 54  Q
    ||||||||||| ||||||||||||||||||||||    
T  39384199 acaatgcataatatatgtaaggtctgaggttcga 39384166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 6765634 - 6765670
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    |||||||||||||||||||||||| | ||||||||||    
T  6765634 acaatgcataaaatatgtaaggtccggggttcgaacc 6765670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 19549456 - 19549496
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||||||||||||| ||||| |||||||||| ||||||||    
T  19549456 atgaacaatgcataatatatgcaaggtctgagattcgaacc 19549496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 35327376 - 35327416
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    |||||||||| ||||||||||| |||||| |||||||||||    
T  35327376 atgaacaatgtataaaatatgttaggtctaaggttcgaacc 35327416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 1257190 - 1257153
Alignment:
Q  22 caatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  1257190 caatgcataaaatatgtaaggtctggggttcgaacccc 1257153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 2705555 - 2705518
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaac 56  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  2705555 gaacaatacataatatatgtaaggtctgaggttcgaac 2705518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 5150120 - 5150080
Alignment:
Q  21 acaatgcataa-aatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  5150120 acaatgcataataatatgtaaggtctggggttcgaaccccg 5150080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 12611072 - 12611036
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  12611072 acaatgcataaaatatgcaaggtctggggttcgaacc 12611036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 18391624 - 18391660
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  18391624 acaatgcataaaatatgcaaggtccgaggttcgaacc 18391660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 31708187 - 31708147
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||||||||||||| ||||| |||||||| ||||||||||    
T  31708187 atgaacaatgcataatatatgcaaggtctggggttcgaacc 31708147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 24226018 - 24225982
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    |||||||||||||||||||||||| ||||||||||||    
T  24226018 acaatgcataaaatatgtaaggtccgaggttcgaacc 24225982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 24839512 - 24839550
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  24839512 acaatgcataaaatatgtaaggtctggggttcgatcccc 24839550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 34722062 - 34722020
Alignment:
Q  17 atgaacaatgcataa-aatatgtaaggtctgaggttcgaaccc 58  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  34722062 atgaacaatgcataataatatgtaaggtccgaggttcgaaccc 34722020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 6768746 - 6768710
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaa 55  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  6768746 gaacaatgcataatatatgcaaggtctgaggttcgaa 6768710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 30753747 - 30753775
Alignment:
Q  18 tgaacaatgcataaaatatgtaaggtctg 46  Q
    |||||||||||||||||||||||||||||    
T  30753747 tgaacaatgcataaaatatgtaaggtctg 30753775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 35165557 - 35165593
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  35165557 acaatacataatatatgtaaggtctgaggttcgaacc 35165593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 22931 - 22974
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||    
T  22931 atgaacaatgcataaaatatgcaaggtccgaggttcaaaccccg 22974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 32944877 - 32944838
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  32944877 acaatgcataaaatatgcaaggtctgaggttcaaaccccg 32944838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 8078139 - 8078101
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  8078139 gaacaatgcataatatatgtaaggtctgatgttcgaacc 8078101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 9656034 - 9655996
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  9656034 acaatgcataaaatatgcaaggtccgaggttcgaacccc 9655996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 34073792 - 34073754
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  34073792 acaatgcataatatatgtaaggtctgacgttcgaacccc 34073754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 41603081 - 41603122
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaaccc 58  Q
    ||||||||||||||| |||||||||||||| ||||| |||||    
T  41603081 atgaacaatgcataatatatgtaaggtctggggttcaaaccc 41603122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 7404804 - 7404840
Alignment:
Q  23 aatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  7404804 aatgcataatatatataaggtctgaggttcgaacccc 7404840  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 22722422 - 22722465
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||    
T  22722422 atgaacaatgcataaaatatgcaaggtccgaggttcaaaccccg 22722465  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 28244145 - 28244102
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||||||||||||| |||||| | |||||||||||||    
T  28244145 atgaacaatgcataaaatatgcaaggtccggggttcgaaccccg 28244102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 42074123 - 42074162
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaac 56  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  42074123 atgaacaatgcataatatatgcaaggtctgaggttcgaac 42074162  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 52575967 - 52576010
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||    
T  52575967 atgaacaatgcataaaatatgcaaggtctggggttcgaatcccg 52576010  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 4947861 - 4947824
Alignment:
Q  23 aatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  4947861 aatgcataaaatatgtaaggtctggggtttgaaccccg 4947824  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 15507306 - 15507269
Alignment:
Q  23 aatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  15507306 aatgcataatatatgtaaggtctgaggttcgaatcccg 15507269  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 31463510 - 31463546
Alignment:
Q  23 aatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  31463510 aatgcataatatatgtaaggtctgaggttcaaacccc 31463546  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 35557119 - 35557155
Alignment:
Q  23 aatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  35557119 aatgcataaaatatgtaaggtctggggttcaaacccc 35557155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 38559937 - 38559897
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||||||||||||| |||| |||||||||||||| |||||    
T  38559937 atgaacaatgcataatatatataaggtctgaggtttgaacc 38559897  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 11410647 - 11410690
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||    
T  11410647 atgaacaatacataaaatatgtaaggtctggggttcgaatcccg 11410690  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 29234011 - 29233973
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  29234011 acaatgcataaaatatgcaaggtctggggttcgaacccc 29233973  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 45701348 - 45701386
Alignment:
Q  17 atgaacaatgcataaaatatgtaaggtctgaggttcgaa 55  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  45701348 atgaacaatgcataaaatatgtaaggtctggagttcgaa 45701386  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 25984065 - 25984028
Alignment:
Q  23 aatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  25984065 aatgcataaaatatgtaagatctgaggttcaaaccccg 25984028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 29251778 - 29251815
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaaccc 58  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  29251778 acaatgcataatatatgcaaggtctgaggttcgaaccc 29251815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 29798155 - 29798118
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaac 56  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  29798155 gaacaatgcataatatatgtaaggtctggggttcgaac 29798118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 31426783 - 31426824
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    |||||||||||||||||| |||||| ||||||||||| ||||    
T  31426783 gaacaatgcataaaatatataaggtttgaggttcgaatcccg 31426824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 9398452 - 9398412
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||||| | |||||||||||||| ||||||||||||    
T  9398452 gaacaatgcatgatatatgtaaggtctggggttcgaacccc 9398412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 17221559 - 17221519
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||||||| ||||| |||||| ||||||||||||||    
T  17221559 gaacaatgcataatatatgcaaggtccgaggttcgaacccc 17221519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 34083359 - 34083399
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||||||| ||||||||||| || ||||||||||||    
T  34083359 gaacaatgcataatatatgtaaggtttggggttcgaacccc 34083399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 119235 - 119201
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaa 55  Q
    ||||||||||| |||||||||||||||||||||||    
T  119235 acaatgcataatatatgtaaggtctgaggttcgaa 119201  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 7739247 - 7739209
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  7739247 acaatgcatcaaatatgtaaggtctgaggttcaaacccc 7739209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 9028109 - 9028075
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaa 55  Q
    |||||||||||||||||||||||||| ||||||||    
T  9028109 acaatgcataaaatatgtaaggtctggggttcgaa 9028075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 29568610 - 29568648
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacccc 59  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  29568610 acaatgcataatatatgtaaggtccgaggttcgaacccc 29568648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 11198790 - 11198823
Alignment:
Q  23 aatgcataaaatatgtaaggtctgaggttcgaac 56  Q
    |||||||||||||||||||||||| |||||||||    
T  11198790 aatgcataaaatatgtaaggtctggggttcgaac 11198823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 22164308 - 22164267
Alignment:
Q  19 gaacaatgcataaaatatgtaaggtctgaggttcgaaccccg 60  Q
    ||||||||||||| |||||||||||||| ||||| |||||||    
T  22164308 gaacaatgcataatatatgtaaggtctggggttcaaaccccg 22164267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 44221471 - 44221508
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaaccc 58  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  44221471 acaatgcataatatatgcaaggtctgaggttcgaaccc 44221508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 9783923 - 9783959
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  9783923 acaatgcataatatatgtaaggtctgaggttcaaacc 9783959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 29681494 - 29681458
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||||||||||||||| || ||||||||||||||||    
T  29681494 acaatgcataaaatatgcaatgtctgaggttcgaacc 29681458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 37735813 - 37735849
Alignment:
Q  21 acaatgcataaaatatgtaaggtctgaggttcgaacc 57  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  37735813 acaatgcataatatatgtaaggtctgaggttcaaacc 37735849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 118840 - 118868
Alignment:
Q  18 tgaacaatgcataaaatatgtaaggtctg 46  Q
    |||||||||||||||||||||||||||||    
T  118840 tgaacaatgcataaaatatgtaaggtctg 118868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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