View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_23 (Length: 569)
Name: NF20633_low_23
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 221 - 551
Target Start/End: Original strand, 46936517 - 46936855
Alignment:
| Q |
221 |
gccagcagtaaaaactaaagcagcaccctgggaacttacttgaattactttg-cgacaagactaacatccaacaagactaacaaccaacaccccgggttt |
319 |
Q |
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| T |
46936517 |
gccagcagtaaaaactaaagcagcaccccgggaacttacttgaattacttcgtcgacaagactaacatccaacaagactaacaaccaacaccccgggttt |
46936616 |
T |
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| Q |
320 |
tagtgcaccattatnnnnnnn-------ccttaaaacttacttgaattacttcgtcgacaagactaacgtccaataccccgggaacaaagccagcaccaa |
412 |
Q |
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| T |
46936617 |
tagtgcaccattataattattaaaaaaaccttaaaacttacttgaattacttcgtcgacaagactaacgtccaataccccgggaacaaagccagcaccaa |
46936716 |
T |
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| Q |
413 |
tcccttgaatcttgtgtggacctagacgtttatcatggcaatttgcacatcagcaacagcttcgaaagtaagttcttatttcaactctaaggaacaaaac |
512 |
Q |
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| T |
46936717 |
tcccttgaatcttgtgtggacctagacgtttatcatggcaatttgcacatcagcaacagcttcgaaagtaagttcttatttcaactctaaggaacaaaac |
46936816 |
T |
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| Q |
513 |
agtgttataactaaccaggctttcctccggacagtacag |
551 |
Q |
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| T |
46936817 |
agtgttataactaaccaggctttcctccggacagtacag |
46936855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 46936380 - 46936515
Alignment:
| Q |
4 |
atgtcgaagaaaattgcaaaataatgacaccatcatcatccttctaaaaattatattcacatgataaataagtgtgtattgtggtgcagtgcgtaagatg |
103 |
Q |
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| T |
46936380 |
atgtccaaaaaaattgcaaaataatgacaccatcatcatccttctaaaaattatattcacatgataaataagtttgtattgtggtgcagtgcgtaagtt- |
46936478 |
T |
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| Q |
104 |
tagtaaaccaggatttaagaagtccataattggctttttgtgcatt |
149 |
Q |
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| T |
46936479 |
---------tgtatttaagaagtccataattggctttttgtgcatt |
46936515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 372 - 536
Target Start/End: Complemental strand, 25125594 - 25125430
Alignment:
| Q |
372 |
aagactaacgtccaataccccgggaacaaagccagcaccaatcccttgaatcttgtgtggacctagacgtttatcatggcaatttgcacatcagcaacag |
471 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |
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| T |
25125594 |
aagactaacgtccaataccccggtaacaaaaccagcaccaatcccttgaatcttgtgtggtcgtagacgtttgtcatggcaatttgcacatcagcaacag |
25125495 |
T |
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| Q |
472 |
cttcgaaagtaagttcttatttcaactctaaggaacaaaacagtgttataactaaccaggctttc |
536 |
Q |
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| T |
25125494 |
cttcaaaagtaagttcttatttcaactctaaggaacaaaacagtgttataactagccaggctttc |
25125430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 863404 - 863366
Alignment:
| Q |
397 |
acaaagccagcaccaatcccttgaatcttgtgtggacct |
435 |
Q |
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| T |
863404 |
acaaagccagcaccaatcccttgaatcttgtgaggacct |
863366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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