View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_24 (Length: 556)
Name: NF20633_low_24
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Complemental strand, 38907569 - 38907037
Alignment:
| Q |
18 |
atctcagaatataaatccatattgtcaacgttctctttcgcggacgatattccgaatgaggttgaggggcctgcatcttcagtataatgttttgagcttc |
117 |
Q |
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| T |
38907569 |
atctcagaatataaatccatattgtcaacgttctctttcgcggaagatcttccgaatgaggttgaggggcctgcatcttcagtataatgttttgagcttc |
38907470 |
T |
|
| Q |
118 |
cgttgtttttagccaactctgagtctgtctgttggctagcactagtccatttattatttgcagaaaccaaatgatcaattgctacacaaggtttccattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38907469 |
cgttgtttttagccaactctgagtctgtctgttggctagcactagtccatttatcatttgcagaaaccaaatgatcaattgctacacaaggtttccattc |
38907370 |
T |
|
| Q |
218 |
aggaaccaattttatcaataacaaatcgattaactcagctatgaattttacattctgatcagcaagttcaagttgctcaaccatttcctttgaaactgag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38907369 |
aggaaccaattttatcaataacaaatcgattaactcagctatgaattttacattctgatcagcaagttcaagttgctcaaccatttcctttgaaactgag |
38907270 |
T |
|
| Q |
318 |
acagcagtatcactgtcaaggtagaagatgaaatggatatattttgcttgtcctgcatataaatcgcaaaaagtataaactttccaccaacaaatttaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38907269 |
acagcagtatcactgtcaaggtagaagatgaaatggatatattttgcttgtcctgcatataaatcgcaaaaagtataaactttccaccaacaaatttaaa |
38907170 |
T |
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| Q |
418 |
agtcattaaagagtagaaatgaactatactaacccctctgatcagctatccgcagaaccaatgatacagaattctcatcatttagaccaccttttagaaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38907169 |
agtcattaaagagtagaaatgaactatactaacccctctgatcagctatccgcagaaccaatgatacagaattctcatcatttagaccaccttttagaaa |
38907070 |
T |
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| Q |
518 |
gaaggtatcgcctcccttcaaccttcttatctc |
550 |
Q |
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| T |
38907069 |
gaaggtatcgcctcccttcaaccttcttatctc |
38907037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 192 - 375
Target Start/End: Complemental strand, 43708618 - 43708435
Alignment:
| Q |
192 |
tcaattgctacacaaggtttccattcaggaaccaattttatcaataacaaatcgattaactcagctatgaattttacattctgatcagcaagttcaagtt |
291 |
Q |
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||||| ||||||||||||||||| ||||||| |||| || ||||||||||||| || ||||| || |||||||| ||||| || || ||||||||||||| |
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| T |
43708618 |
tcaatcgctacacaaggtttccaatcaggaatcaatgttgtcaataacaaatcaatcaactcggcgatgaatttaacattatgctcggcaagttcaagtt |
43708519 |
T |
|
| Q |
292 |
gctcaaccatttcctttgaaactgagacagcagtatcactgtcaaggtagaagatgaaatggatatattttgcttgtcctgcat |
375 |
Q |
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||||||||||||| |||| ||||| | || ||||||||||| |||||||| ||||||||||||| | ||||| | ||||||| |
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| T |
43708518 |
gctcaaccatttcacttgacactgacatggccgtatcactgtcgaggtagaatatgaaatggatatttcttgctcgccctgcat |
43708435 |
T |
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