View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_27 (Length: 547)
Name: NF20633_low_27
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 20 - 530
Target Start/End: Original strand, 52139120 - 52139633
Alignment:
| Q |
20 |
ctacaaagaaaaggtgtctctgaccaagaggaagcaaatggatccaaacaaaagatgctagagggcagttacaaagaacatgtataattgattccttgct |
119 |
Q |
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| T |
52139120 |
ctacaaagaaaaggtgtctctgaccaagaggaagcaaatggatccaaacaaaagatgctagagggcagttacaaagaacatgtaaaattgattccttcct |
52139219 |
T |
|
| Q |
120 |
tcagttataacaatacggatcagcannnnnnnnn-atctacttatcatcttattagc--ggagtctcccatgaacaattttccaagtaacacgcccgctc |
216 |
Q |
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| T |
52139220 |
tcagttataacaatacggatcagcactccccccccatctacttatcatcttattagcagggagtctcccatgaacaattttccaagtaacacgcccgctc |
52139319 |
T |
|
| Q |
217 |
tggtacacccgatttccaagccatagaccaaaccgaatcaggtgcttgcttgtagaggaaaatccacatggcaacttataggcgcttgaaatagtgaaat |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52139320 |
tggtacacccgatttccaaaccatagaccaaaccgaatcaggtgcttgcttgtagaggaaaatccacatagcaacttataggcgcttgaaatagtgaaat |
52139419 |
T |
|
| Q |
317 |
ttcatctactctcaccagaccaatatctcaaatccgaaccttcctcaactctaggagggaaaataacattaaatttttggagaattgcagcaggcattaa |
416 |
Q |
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|||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52139420 |
ttcatccactctcaccagatcaatatctcaattccgaaccttcctcaactctaggagggaaaataacattaaatttttggagaattgcagcaggcattaa |
52139519 |
T |
|
| Q |
417 |
accttggagctcactcaacttccactctccattatcatccactagctcatgaacacactaatctctcatatgactaggaatatcattgacccaatcgtcc |
516 |
Q |
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| T |
52139520 |
accttggagctcactcaacttccactctccattatcatccactagctcatgaacacactaatctctcatatgactaggaatatcattcacccaatcgtcc |
52139619 |
T |
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| Q |
517 |
aatcgtgtctttcc |
530 |
Q |
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|||||||||||||| |
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| T |
52139620 |
aatcgtgtctttcc |
52139633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 34119882 - 34119853
Alignment:
| Q |
1 |
tcccactaagtggggtcggctacaaagaaa |
30 |
Q |
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| T |
34119882 |
tcccactaagtggggtcggctacaaagaaa |
34119853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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