View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_28 (Length: 544)
Name: NF20633_low_28
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 41707036 - 41706517
Alignment:
| Q |
19 |
aactcatcatcttggaatttcattccataccttggattgtgtacctggttcattccacacaactgaaaaatattggggctagattttctcatgtcatcat |
118 |
Q |
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| T |
41707036 |
aactcatcatcttggaatttcattccataccttggattgtgtacctggttcattccacacaactgaaaaatattggggctagattttctcatgtcatcat |
41706937 |
T |
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| Q |
119 |
cttaacagtgacaacatcctcattcaaacaataaaaatatgtacattcatgcatacgtaagattattataattaattaacnnnnnnntatacatgcatat |
218 |
Q |
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| T |
41706936 |
cttaacagtgacaacatcctcattcaaacaataaaaatatgtacattcatgcatacgtaagattattataattaattaacaaaaaaatatacatgcatat |
41706837 |
T |
|
| Q |
219 |
aaatacatagttac-gtcatccaccactcaagagcacacgagtggatgaaccatgcataagcaatttta-ttctcacagaagnnnnnnnngacccgaccc |
316 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
41706836 |
aaatacatagttacagtcattcaccactcaagagcacacgagtgtatgaaccatgcataagcaattttatttctcacagaagaaaaataagacccgaccc |
41706737 |
T |
|
| Q |
317 |
gtgtctgaaacgggaaagaatccaattatccaaatgcacccgtgcaggtgcaggtatatacgctagtttttgtcgcgattgagtctatcccaaagcgacg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706736 |
gtgtctgaaacgggaaagaatccaattatccaaatgcacccgtgcaggtgcaggtatatacgctagtttttgtcgcgattgagtctatcccaaagcgacg |
41706637 |
T |
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| Q |
417 |
cgcactttctcctagcaaaacccacgcgcttcttttcaagatcatattcaacttcaaacccttgctgttgataattcccaagtactcctccgggcccacc |
516 |
Q |
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| T |
41706636 |
cgcactttctcctagcaaaacccacgcgcttcttttcaagatcatattcaacttcaaacccttgctgttgataattcccaagtactcctccgggcccacc |
41706537 |
T |
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| Q |
517 |
gctcatttcagcttcatctc |
536 |
Q |
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| T |
41706536 |
gctcatttcagcttcatctc |
41706517 |
T |
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Back To:
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 495
Target Start/End: Original strand, 3743253 - 3743347
Alignment:
| Q |
401 |
ctatcccaaagcgacgcgcactttctcctagcaaaacccacgcgcttcttttcaagatcatattcaacttcaaacccttgctgttgataattccc |
495 |
Q |
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|||||||||||| ||||||||| | || | || || |||||||||| || || |||||||| | || |||||||||||||||||||||||||| |
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| T |
3743253 |
ctatcccaaagcaacgcgcactctttcttcgcgaaccccacgcgctctttctccagatcataaaccacctcaaacccttgctgttgataattccc |
3743347 |
T |
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