View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_low_29 (Length: 538)
Name: NF20633_low_29
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_29 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 1614879 - 1615302
Alignment:
| Q |
10 |
aagaatataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1614879 |
aagaaaataagaaccaagagaacataagaaacaatctcaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaa |
1614978 |
T |
|
| Q |
110 |
agcaacaggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
1614979 |
agcaacaggagaacaatacaaacagccggttaaaaagacaatatttttttt-gtaaattgagacaaaacgcatgaagacaaaggcaaagagaagaaaata |
1615077 |
T |
|
| Q |
210 |
aaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgc |
309 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1615078 |
aaaccgatacggtgcagt-----tgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgc |
1615172 |
T |
|
| Q |
310 |
tgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattcttctt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1615173 |
tgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattcttctt |
1615272 |
T |
|
| Q |
410 |
tcaagcttcacaatgttgaatttgcctacc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
1615273 |
tcaagcttcacaatgttgaatttgcctacc |
1615302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 24456207 - 24455839
Alignment:
| Q |
16 |
ataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| |
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|
| T |
24456207 |
ataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactatagagccaaactacaacaacctattcagaaaaactaac |
24456108 |
T |
|
| Q |
116 |
aggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacaca-tgaagacaaaggcaaagagaagaaaataaaacc |
214 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
24456107 |
aggagaacaatacaaacagccagttaaaaagacaata-atttttttgtaaattgagccaaaacacacagaaaacaaaggcaaagagaagaaaataaaacc |
24456009 |
T |
|
| Q |
215 |
gatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctg |
314 |
Q |
| |
|
|||| | ||||||||| | | | ||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||| || |
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|
| T |
24456008 |
gatatg-----gtgcagctggacc--acagagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttg |
24455916 |
T |
|
| Q |
315 |
cactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca |
391 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
24455915 |
cattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgca |
24455839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 437
Target Start/End: Complemental strand, 24455449 - 24455400
Alignment:
| Q |
388 |
tgcatatatagtcattcttctttcaagcttcacaatgttgaatttgccta |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24455449 |
tgcatatatagtcattcttctttcaagcttcacaatattgaatttgccta |
24455400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 4e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 43228439 - 43228075
Alignment:
| Q |
19 |
agaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacagg |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43228439 |
agaaccaagagaacataagaaactatcccaaagaaaacaaaccaaaatcaactacactaaagagccaaactacaacaacctattctaaaaaagcaacagg |
43228340 |
T |
|
| Q |
119 |
agaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgata |
218 |
Q |
| |
|
||| |||||||||||||| |||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
43228339 |
agaccaatacaaacagccagttaaaaagacagta-ttttttttgtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgata |
43228241 |
T |
|
| Q |
219 |
cggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcact |
318 |
Q |
| |
|
| |||||||| ||| | ||||| |||||||||| | |||| ||||||| ||||| | ||| ||||||| | | ||||||||||||||||||| |
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|
| T |
43228240 |
tg-----ttgcagctggaac--acagagacaaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcact |
43228148 |
T |
|
| Q |
319 |
acattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca |
391 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
43228147 |
acattagtccacatgccgaaagccaactctaaattatgcagaaaatcaccccgatctcactccaaattatgca |
43228075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 369
Target Start/End: Complemental strand, 14839323 - 14839131
Alignment:
| Q |
170 |
agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa |
269 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||||||||||||||| | ||||| ||| |||| | |||| |||||||||| |||| ||| |
|
|
| T |
14839323 |
agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa |
14839231 |
T |
|
| Q |
270 |
aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct |
369 |
Q |
| |
|
|||| || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| ||| |||||||||||||||| |||| |||||| |||| |
|
|
| T |
14839230 |
aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct |
14839131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 43227662 - 43227620
Alignment:
| Q |
395 |
atagtcattcttctttcaagcttcacaatgttgaatttgccta |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43227662 |
atagtcattcttctttcaagcttcacaatgttgaatttgccta |
43227620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 162 - 393
Target Start/End: Original strand, 49234306 - 49234533
Alignment:
| Q |
162 |
gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg |
261 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| | |||||||| |||| ||| ||| |||||||||||| |
|
|
| T |
49234306 |
gtaaattgagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacaca |
49234400 |
T |
|
| Q |
262 |
gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgc-aga |
360 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
49234401 |
gggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaaattatgcaaga |
49234500 |
T |
|
| Q |
361 |
aaatcacctcgatctctctccaaactatgcata |
393 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| |
|
|
| T |
49234501 |
aaatcacctcgatctcgctccaaattatgcata |
49234533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 162 - 391
Target Start/End: Original strand, 49233735 - 49233959
Alignment:
| Q |
162 |
gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg |
261 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||| | |||||||| |||| ||| ||| |||||| ||||| |
|
|
| T |
49233735 |
gtaaattaagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacaca |
49233829 |
T |
|
| Q |
262 |
gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa |
361 |
Q |
| |
|
|||| |||| |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49233830 |
gggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaa |
49233929 |
T |
|
| Q |
362 |
aatcacctcgatctctctccaaactatgca |
391 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |
|
|
| T |
49233930 |
aatcacctcgatctcgctccaaattatgca |
49233959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 162 - 391
Target Start/End: Complemental strand, 50862741 - 50862518
Alignment:
| Q |
162 |
gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg |
261 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||| | |||||| || |||| ||| ||| |||||||||||| |
|
|
| T |
50862741 |
gtaaattga-ccaaaacacatgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacaca |
50862648 |
T |
|
| Q |
262 |
gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa |
361 |
Q |
| |
|
|||| ||||||| ||||||| || |||||||| ||||||| || ||||| | ||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
50862647 |
gggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaaattatgcagaa |
50862548 |
T |
|
| Q |
362 |
aatcacctcgatctctctccaaactatgca |
391 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |
|
|
| T |
50862547 |
aatcacctcgatctcgctccaaattatgca |
50862518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 47724037 - 47723984
Alignment:
| Q |
338 |
aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca |
391 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
47724037 |
aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca |
47723984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 47731029 - 47730976
Alignment:
| Q |
338 |
aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca |
391 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
47731029 |
aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca |
47730976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 369
Target Start/End: Original strand, 27962367 - 27962559
Alignment:
| Q |
170 |
agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa |
269 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||||||||||||||| | ||||| ||| |||| | |||| |||||||||| |||| ||| |
|
|
| T |
27962367 |
agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa |
27962459 |
T |
|
| Q |
270 |
aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct |
369 |
Q |
| |
|
|||| || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| ||| |||||||||||||||| |||| |||||| |||| |
|
|
| T |
27962460 |
aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct |
27962559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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