View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_3 (Length: 830)
Name: NF20633_low_3
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 763; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 11 - 814
Target Start/End: Original strand, 42959918 - 42960725
Alignment:
| Q |
11 |
catcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatcc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42959918 |
catcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatcc |
42960017 |
T |
|
| Q |
111 |
gaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacat |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960018 |
gaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacat |
42960117 |
T |
|
| Q |
211 |
gctttggtataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960118 |
gctttggtataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactg |
42960217 |
T |
|
| Q |
311 |
gacaacttttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacattt |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960218 |
gacaacttttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacattt |
42960317 |
T |
|
| Q |
411 |
gtgttgatcaatttgagatcacctgttgaccatggattagcaacttttgataagatgaatcctcccttaaatgcttcaattggaatgtcttttttgttct |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960318 |
gtgttgatcaatttgagatcacctgttgaccatggattagcaacttttgataagatgaatcctcccttaaatgcttcaattggaatgtcttttttgttct |
42960417 |
T |
|
| Q |
511 |
tcacaaaagctttaatggattctgctgatctttgtttaggtgggattgttgagagctgcccaatctggtttatcatgaaaggaaaaatcacttctatgca |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
42960418 |
tcacaaaagctttaatggattctgctgatctttgtttaggtgggattgttgagagctgcccaatctggtttatcatgaaatgaaaaattacttctatgca |
42960517 |
T |
|
| Q |
611 |
tgttacttgttagtttctattttactattcaatgctcgtatagacattgcacgccttgttgattgtgctcggtaaatggttaatgacttccagcatcgcg |
710 |
Q |
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| T |
42960518 |
tattacttgttagtttctattttactattcaatgctcgtatagacgttgcacgccttgttgattgtgctcggtaaatggttaatgacttccagcatcgtg |
42960617 |
T |
|
| Q |
711 |
gttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaattaacc----atatactaaacttgattagccgcatatttgaact |
806 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42960618 |
gttaattgtgttcggtaaatggttaatgagttgcgacatcttgtaatattcattaattaaccatatatatactaaacttgattagccgcatatttgaact |
42960717 |
T |
|
| Q |
807 |
atgttaac |
814 |
Q |
| |
|
|||||||| |
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| T |
42960718 |
atgttaac |
42960725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 11 - 489
Target Start/End: Complemental strand, 5504817 - 5504339
Alignment:
| Q |
11 |
catcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatcc |
110 |
Q |
| |
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||||||||| ||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| | ||| || ||||||| ||| |||||||||||| ||| |
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| T |
5504817 |
catcatcatcacagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatcgacgactcggagtctgtcaacgtcaagaaccttataatca |
5504718 |
T |
|
| Q |
111 |
gaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacat |
210 |
Q |
| |
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| | ||||| || ||||| ||||||||||| || |||||||| ||||| ||||||||| | || ||||| ||||| || ||| |||||| ||| |
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| T |
5504717 |
gggctaactacctttcccacatgacatccaccatggtaatgccaaattgtgatgacagtgtctttgcagaactgctctagggaagatgtgtcattggcat |
5504618 |
T |
|
| Q |
211 |
gctttggtataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactg |
310 |
Q |
| |
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| |||||||| | ||||| | ||| ||||||| | |||||||||| |||| |||| | ||| ||| || ||| ||||||||||| | |||||| |
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| T |
5504617 |
gttttggtatgaagttgacagtagtcttcacactaaggttaagaagtctctctgcggtttctcttttacataatgtgtagtttgtgaagtgttctgactg |
5504518 |
T |
|
| Q |
311 |
gacaacttttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacattt |
410 |
Q |
| |
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||| ||||| | || | | ||| |||||||| ||||| | | |||||| || ||||||||||||||||||||||||||||| || |||| |||||| |
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| T |
5504517 |
gactactttaatggccatgctgatcccttcgacgcagcgctttaaatcgtatggatgactgaagtagttgaaggtaacagcaggattttcattcacattg |
5504418 |
T |
|
| Q |
411 |
gtgttgatcaatttgagatcacctgttgaccatggattagcaacttttgataagatgaatcctcccttaaatgcttcaa |
489 |
Q |
| |
|
||||||| ||| ||||| |||||| |||||| | | | ||||||| || |||| || |||||||| |||||||||| |
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| T |
5504417 |
gtgttgaccaacttgagctcacctactgaccaagcactgccaactttggacaagacaaagcctcccttgaatgcttcaa |
5504339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 3094314 - 3094265
Alignment:
| Q |
138 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
187 |
Q |
| |
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||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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| T |
3094314 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
3094265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 708 - 767
Target Start/End: Complemental strand, 8309561 - 8309504
Alignment:
| Q |
708 |
gcggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaat |
767 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||| |
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| T |
8309561 |
gcggttaattgtgctcggtgaatggttagtgagttgcgatatcttgt--tattcattaat |
8309504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 3085468 - 3085419
Alignment:
| Q |
138 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
187 |
Q |
| |
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||||||||||| ||||| || || |||||||||||||||||||| ||||| |
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| T |
3085468 |
ccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttc |
3085419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 710 - 766
Target Start/End: Original strand, 29246407 - 29246463
Alignment:
| Q |
710 |
ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaa |
766 |
Q |
| |
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|||||||| ||||| ||| |||||||| ||||||||||| ||||| ||||||||||| |
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|
| T |
29246407 |
ggttaattatgttcagtgtatggttaatgagttgcgacaccttgttatattcattaa |
29246463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 767
Target Start/End: Original strand, 40829662 - 40829719
Alignment:
| Q |
710 |
ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaat |
767 |
Q |
| |
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||||||||||| || ||| |||||||| ||||||| ||| ||||| |||||||||||| |
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|
| T |
40829662 |
ggttaattgtgctcagtggatggttaatgagttgctacaccttgttatattcattaat |
40829719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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