View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_30 (Length: 528)
Name: NF20633_low_30
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 17 - 515
Target Start/End: Complemental strand, 48465381 - 48464883
Alignment:
| Q |
17 |
caaaaatggcaatgaaaatcgcaaaggctatctccgtgacataagtagttgtcttgaggttttgtccaagagaactgtaaaatatgacaaaacttattac |
116 |
Q |
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| T |
48465381 |
caaaaatggcaatgaaaatcgcaaaggctatctccgtgacataagtagttgtcttgaggttttgtccaagagaactgtaaaatatgacaaaacttattac |
48465282 |
T |
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| Q |
117 |
ttgtctttaaaatactctaaattttccattgaaaaaactgggatgcaaattaagataaacatataaatttctatagttcataaaatgtgtatgttgcatt |
216 |
Q |
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| T |
48465281 |
tcgtctttaaaatactctaaattttccattgaaaaaactgggatgcaaattaagataaacatataaatttctatagttcataaaatgtgtatgttgcatt |
48465182 |
T |
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| Q |
217 |
tagcatattaagaaaatggcgaaaactatcatttaccaaccttaaatttcgcaaaccccaccaaaagcagtagaagaacttctgaggaaaatctgtgttt |
316 |
Q |
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| T |
48465181 |
tagcatattaagaaaatggcgaaaactatcatttaccaaccttaaatttcgcaaaccccaccaaaagcagtagaagaacttctgaggaaaatctgtgttt |
48465082 |
T |
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| Q |
317 |
gaatcaaccacaagtgattgtagagcatcgtaaaatattccaaaattgaaggttgttgcgttgttgatttcatcagggtcaaccaaagtacaagtaccgt |
416 |
Q |
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| T |
48465081 |
gaatcaaccacaagtgattgtagagcatcgtaaaatattccaaaattgaaggttgttgtgttgttgatttcatcagggtcaaccaaagtacaagcaccgt |
48464982 |
T |
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| Q |
417 |
tgagaagtgagaggactgttgcatttcgcggtccacaacccaagaatgagtcatgaaagatcgaagcattgttcatcactctgcgccaacaccgcacct |
515 |
Q |
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| T |
48464981 |
tgagaagtgagaggactgttgcatttcgcggtccacaacccaagaatgagtcatgaaagatcgaagcattgttcatcactctgcgccaacaccgcacct |
48464883 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 10067009 - 10067052
Alignment:
| Q |
251 |
accaaccttaaatttcgcaaaccccaccaaaagcagtagaagaa |
294 |
Q |
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| T |
10067009 |
accaacctcaaattgcgcaaaccccaccaaaagcagtagaagaa |
10067052 |
T |
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