View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_34 (Length: 502)
Name: NF20633_low_34
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 3 - 470
Target Start/End: Original strand, 51322741 - 51323185
Alignment:
| Q |
3 |
taatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggaggccgctttgagatgtttataaaaatggat |
102 |
Q |
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| T |
51322741 |
taatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggcggaagggaggccgctttgagatgtttataaaaatggat |
51322840 |
T |
|
| Q |
103 |
aagggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgtttatgtaaagcatctttccctttgttctc |
202 |
Q |
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| T |
51322841 |
aagggtaggggtaggatgtagaatcacatcttaatgccacatttgataaaactgccaaacaagttgcgtgt-------aa-----ttaacatttgttctc |
51322928 |
T |
|
| Q |
203 |
cttcatccaacacaatgacttattggtagttttcttccctttgatcaattgttctctgtcattaacattttgttcgtttgtacatacatcaacaattagc |
302 |
Q |
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| T |
51322929 |
cttcatctaac-------cttataggtagttttcttccctttgttccg-----ctctgtcattaacattttgttcgtttgtacatacatcaacaattagc |
51323016 |
T |
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| Q |
303 |
tatatctagtagcatttagcttgccgttcaagtagattccatatattttgtaataatac-agataacttgtggatgcaggtgattatttgtgcagtggag |
401 |
Q |
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| T |
51323017 |
tatatctagtagcatttagcttgccgttcaagtaggttccatatattttgtaataatacaagataacttttggatgcaggtgattatttgtgcagtggag |
51323116 |
T |
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| Q |
402 |
aggtccaacgagcaattcctgttttacagaaagcatatggagatagcatgcataaagttttgcatgttg |
470 |
Q |
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| T |
51323117 |
aggtccaacaaggaattcctgttgtacagaaagcatacggagatagcattcataaagttttgcatgttg |
51323185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 4750784 - 4750480
Alignment:
| Q |
1 |
cataatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggaggccgctttgagatgtttataaaaatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4750784 |
cataatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccaaagttgggggcggaagggaggccgctttgagatgtttataaaaatgg |
4750685 |
T |
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| Q |
101 |
ataagggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgtttatgtaaagcatctttccctttgttc |
200 |
Q |
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| T |
4750684 |
gtaagggtaggggtaggatgtagaatcacatgttaatgcctcatttgataaaactgccaaacaagttgcatgtttatgtaaagcatctttccctttgttc |
4750585 |
T |
|
| Q |
201 |
tccttcatccaacacaatgacttattggtagttttcttccctttgatcaattgttctctgtcattaacattttgttcgtttgtacatacatcaacaatta |
300 |
Q |
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| T |
4750584 |
tccttcatccaacacaatgacttattggtagttttcttccctttgatcaattgttctctgtcattaacatt--------ttgtacatacatcaacaatta |
4750493 |
T |
|
| Q |
301 |
gctatatctagta |
313 |
Q |
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||||||||||||| |
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| T |
4750492 |
gctatatctagta |
4750480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 4750990 - 4750794
Alignment:
| Q |
1 |
cataatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggaggccgctttgagatgtttataaaaatgg |
100 |
Q |
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| T |
4750990 |
cataatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggcggaagggaggccgctttgagatgtttataaaaatgg |
4750891 |
T |
|
| Q |
101 |
ataagggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgtttatgtaaagcatctttccctttg |
197 |
Q |
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| T |
4750890 |
gtaagggtaggggtaggatgtagaatcacatgttaatgcctcatttgataaaactgccaaacaagttgcatgtttatgtaaagcatctttcgctttg |
4750794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 310 - 485
Target Start/End: Complemental strand, 4750200 - 4750025
Alignment:
| Q |
310 |
agtagcatttagcttgccgttcaagtagattccatatattttgtaataatacagataacttgtggatgcaggtgattatttgtgcagtggagaggtccaa |
409 |
Q |
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| T |
4750200 |
agtagcatttagcttgccgttcaagtaggttccatatattttgtaataatacagataacttgtggatgcaggtgattatttgtgcagtggagaggtccaa |
4750101 |
T |
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| Q |
410 |
cgagcaattcctgttttacagaaagcatatggagatagcatgcataaagttttgcatgttggtccagacacttgtt |
485 |
Q |
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| T |
4750100 |
cgagcaattcctgttttacagaaagcatatggagatagcatgcataaagttttgcatgttggtccagacacttgtt |
4750025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 485
Target Start/End: Original strand, 2439540 - 2439596
Alignment:
| Q |
429 |
agaaagcatatggagatagcatgcataaagttttgcatgttggtccagacacttgtt |
485 |
Q |
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|||||||||| ||||| ||||||||||| |||||||| ||||| || ||| |||||| |
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| T |
2439540 |
agaaagcatacggagacagcatgcataaggttttgcacgttggccctgactcttgtt |
2439596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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