View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_low_35 (Length: 502)
Name: NF20633_low_35
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 22027870 - 22027640
Alignment:
| Q |
11 |
cagagatttgacgggaagaaaagaaagcagttctgtgataagttcgtcaggaaggattatcggccctgacgccgagttgggaggacacttcagcggcttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22027870 |
cagagatttgacgggaagaaaagaaagcagttctgtgataagttcgtcaggaaggattatcggccctgacgccgagttgggaggacacttcagcggcttc |
22027771 |
T |
|
| Q |
111 |
gctgataagagattcatgacagcagagctgtgtataatttagctgtccgctggaagcatgaataagagattatagtttcgtttcttgtttttgaaggaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22027770 |
gctgataagagattcatgacagcagagctgtgtataatttagctgtccgctggaagcatgaataagagattatagtttcgttttttgtttttgaaggaag |
22027671 |
T |
|
| Q |
211 |
attagggtttctttggaagggaaaaaattat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
22027670 |
attagggtttctttggaagggaaaaaattat |
22027640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 290 - 484
Target Start/End: Complemental strand, 22026893 - 22026699
Alignment:
| Q |
290 |
ggctaaattacattgttgattccttttaaatttgacgtttgtaacatacatgttagttatttttatcgcacatgagtcctttaagcttgtatacgttctc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22026893 |
ggctaaattacattgttgattccttttaaatttgacgtttgtaacatacatgttagttatttttatcgcacatgagtcctttaagcttgtatacgttctc |
22026794 |
T |
|
| Q |
390 |
agtatagtcctttcgctaacctaaacgtcacaacaacgatgatgtgcttgttaagtgtatgatgtgatatttaagtttttaaacaatgtataacc |
484 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22026793 |
agtatagtcctttcgctaacctaaacgttacaaaaacgatgatgtgcttgttaagtgtatgatgtgatatttaagtttttaaacgatgtataacc |
22026699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 22039511 - 22039438
Alignment:
| Q |
11 |
cagagatttgacgggaagaaaagaaagcagttctgtgataagttcgtcaggaaggattatcggccctgacgccg |
84 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||| || ||||| |||||||||||| |||||||| |
|
|
| T |
22039511 |
cagagatttgaccggaaggaaagaaagcagttctgtgataatctcatcagggaggattatcggcaatgacgccg |
22039438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 22036318 - 22036254
Alignment:
| Q |
9 |
agcagagatttgacgggaagaaaagaaagcagttctgtgataagttcgtcaggaaggattatcgg |
73 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||| || ||| ||||||||||| |
|
|
| T |
22036318 |
agcagagatttgaccggaaggaaagaaagcagttctgtgataaggtcaagagggaggattatcgg |
22036254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 18325444 - 18325382
Alignment:
| Q |
12 |
agagatttgacgggaagaaaagaaagcagttctgtgataagttcgtcaggaaggattatcggc |
74 |
Q |
| |
|
|||||||| || |||||| ||||||||| ||||||||||||||| || || |||||||||||| |
|
|
| T |
18325444 |
agagatttcacaggaagataagaaagcacttctgtgataagttcatcggggaggattatcggc |
18325382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 22026938 - 22026904
Alignment:
| Q |
233 |
aaaaattattataatctggaaattatgagtttaag |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
22026938 |
aaaaattattataatctggaaattatgagtttaag |
22026904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 22020604 - 22020541
Alignment:
| Q |
11 |
cagagatttgacgggaagaaaagaaagcagttctgtgataagttcgtcaggaaggattatcggc |
74 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||| || ||||| || ||||||||| |
|
|
| T |
22020604 |
cagagatttcactggaaggaaagaaagcagttctgtgataatctcatcagggagaattatcggc |
22020541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 10206246 - 10206310
Alignment:
| Q |
12 |
agagatttgacgggaagaaaagaaagcagttctgt--gataagttcgtcaggaaggattatcggc |
74 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||| | ||||||||||||||| |||||||||||| |
|
|
| T |
10206246 |
agagatttcacgggaaggaaagaaagcacttctatatgataagttcgtcagggaggattatcggc |
10206310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 3234782 - 3234832
Alignment:
| Q |
24 |
ggaagaaaagaaagcagttctgtgataagttcgtcaggaaggattatcggc |
74 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
3234782 |
ggaaggaaagaaagcacttctgtgataagttctacagggaggattatcggc |
3234832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 11971853 - 11971909
Alignment:
| Q |
12 |
agagatttgacgggaagaaaagaaagcagttctgtgataagttcgtcaggaaggatt |
68 |
Q |
| |
|
||||||||||| ||||| || ||||||| ||||| |||||| |||||||| |||||| |
|
|
| T |
11971853 |
agagatttgaccggaaggaaggaaagcacttctgcgataagctcgtcagggaggatt |
11971909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University