View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_37 (Length: 500)
Name: NF20633_low_37
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_37 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 38 - 476
Target Start/End: Original strand, 14780058 - 14780479
Alignment:
| Q |
38 |
gttacataagttgtggaaccatatttagttaatttacataagttaagagaccaaattgactgattttaaagttaaggagttaaactgaacttttacaata |
137 |
Q |
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| T |
14780058 |
gttacataagttgtggaaccatatttagttaatttacataagttaagagaccaaattaactgattttgaagttaaggggttaaactgaacttttacaata |
14780157 |
T |
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| Q |
138 |
agttaatggatcaaattaaacgattttgaaattatagaatcaaattaaacttttaaaataagttaaggga-caaagtgttatttaag--nnnnnnnaatt |
234 |
Q |
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| T |
14780158 |
agttaatggatcaaattaaacggttttgaaattatagaaccaaactaaacttttaaaataagttaagggaccaaagtgttatttaagcattttttatatt |
14780257 |
T |
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| Q |
235 |
agtagtcattatttacaggtctagaaattaacaatctaaatttcattgggtcccaccgccaaaagacataatccttcccaaaggaatgcattataagaaa |
334 |
Q |
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| T |
14780258 |
agtattcattatttaccggtctagaaattaacaatctaaatttcattgggtcccaccg-------------------ccaaaggaatgaattataagaaa |
14780338 |
T |
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| Q |
335 |
aatgaaaacaattaactacctctatttttttctttctttatctnnnnnnnnnnngttaatttttaaaattgatcttttgacaagttttaaaattgatctt |
434 |
Q |
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| T |
14780339 |
aatgaaaacaattaactacctctatttttttctttctttatct-aaaaaaaaaagtcaatttttaaaattgatcttttgacaagttttaaaattgatctt |
14780437 |
T |
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| Q |
435 |
ctagaatgtgatttaattactatcttcataaccattaattag |
476 |
Q |
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| T |
14780438 |
ctagaatgtgatttaattactatcttcataaccatgaattag |
14780479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 26728970 - 26729093
Alignment:
| Q |
101 |
ttttaaagttaaggagttaaactgaacttttacaataagttaatggatcaaattaaacgattttgaaattataga-atcaaattaaacttttaaaataag |
199 |
Q |
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| T |
26728970 |
ttttaaagttaagggactaaactaaacttttaaaataagttaaaggatcaaattgatcggttttaaagtta-agagagtaagttgaaattttaaaataag |
26729068 |
T |
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| Q |
200 |
ttaaggga-caaagtgttatttaag |
223 |
Q |
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| T |
26729069 |
ttaagggaccaaagtggtatttaag |
26729093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 12728157 - 12728111
Alignment:
| Q |
67 |
taatttacataagttaagagaccaaattgactgattttaaagttaag |
113 |
Q |
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| T |
12728157 |
taatttacaaaagttaagagattaaattgactgatattaaagttaag |
12728111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 33952346 - 33952384
Alignment:
| Q |
76 |
taagttaagagaccaaattgactgattttaaagttaagg |
114 |
Q |
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| T |
33952346 |
taagttaagagaccaaattaattgattttaaagttaagg |
33952384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 47584455 - 47584523
Alignment:
| Q |
75 |
ataagttaagagaccaaattgactgattttaaagttaaggagttaaactgaacttttacaataagttaa |
143 |
Q |
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| T |
47584455 |
ataagttaaaataccaaattgactgattttaaatttaagtgatcaaactgaacttttaaaataaattaa |
47584523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 10069914 - 10069960
Alignment:
| Q |
178 |
caaattaaacttttaaaataagttaaggga-caaagtgttatttaag |
223 |
Q |
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| T |
10069914 |
caaattgaacttttaaattaagttaagggaccaaagtgttatttaag |
10069960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 15849 - 15925
Alignment:
| Q |
76 |
taagttaagagaccaaattgactgattttaaagttaaggagttaaactgaacttttacaataagttaatggatcaaa |
152 |
Q |
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| T |
15849 |
taagttaagagactaaattgtatgattttaaagtcaacggatcatactgaatttttaaaataagttaagggatcaaa |
15925 |
T |
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