View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_40 (Length: 486)
Name: NF20633_low_40
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 36401427 - 36401668
Alignment:
| Q |
17 |
atactttaatattcaataattagacaataatgcaggccatagctataggagtttgttgtcacaaaattccaccaccaggtaatgaggttattggctttta |
116 |
Q |
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| T |
36401427 |
atactttaatattcaataattagacaataatgcaggccatagctataggagtttgttgtcacaaaattccaccaccaggtaatgaggttattggctttta |
36401526 |
T |
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| Q |
117 |
gcttcaaatttccaatgcaatgcaatgcaaaagaggattatctttactttatatgagtaaattagtaaatgatcgtggatttaacttatctaaagtgaac |
216 |
Q |
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| T |
36401527 |
gcttcaaatttc-----caatgcaatgcaaaagaggattatctttactttataggagtaatttagtaaatgatcgtggatttaacttatctaaagtgaac |
36401621 |
T |
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| Q |
217 |
aatttactttataggataaaataagtaatttcaacggttaatgagaa |
263 |
Q |
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| T |
36401622 |
aatttactttataggataaaataagtaatttcaacggttaatgagaa |
36401668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 256 - 468
Target Start/End: Complemental strand, 36402131 - 36401918
Alignment:
| Q |
256 |
aatgagaatgatgttaagccaacacgggaaacatagccaattaaccattacaaactacaatcaaatcttcaagagacacctctattagaatttaattttt |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36402131 |
aatgagaatgatgttaagccaacacgggaaacatagccaattaaccattacaaactacaatcaaatcttcaagagacacctctattagaatttaactttt |
36402032 |
T |
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| Q |
356 |
aaagggaattgtgtaggaggtttggggttaaatataccttaaatatactcattactagtannnnnnncatgtgagatgaaaagctgttttcctcg-cacc |
454 |
Q |
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| T |
36402031 |
aaagggaattgtgtaggaggtttggggttaaatataccttaaatatactcattactagtatttttttcatgtgagatgaaaagctgttttcctcgtcacc |
36401932 |
T |
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| Q |
455 |
aaaaattgatatta |
468 |
Q |
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| T |
36401931 |
aaaaattgatatta |
36401918 |
T |
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