View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_41 (Length: 482)

Name: NF20633_low_41
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_41
NF20633_low_41
[»] chr4 (1 HSPs)
chr4 (16-482)||(53615279-53615745)


Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Original strand, 53615279 - 53615745
Alignment:
Q  16 gtattgacacatgtaaaaggtgtaaggtttcaaaacttgtttttctaaacaaagaaaaatgcaggattggtttaacttaccttgagatcgcggtgataaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615279 gtattgacacatgtaaaaggtgtaaggtttcaaaacttgtttttctaaacaaagaaaaatgcaggattggtttaacttaccttgagatcgcggtgataaa 53615378  T
Q  116 ctcccttgttatggcagtagtcgacggcgtcaataagttgttggaatagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615379 ctcccttgttatggcagtagtcgacggcgtcaataagttgttggaatagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaa 53615478  T
Q  216 aattttcagaattgaagtattataattgtaagtacacaacatttgaacaacaaagagattgttgatatgattctcactattttgtccaatagttgacctc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615479 aattttcagaattgaagtattataattgtaagtacacaacatttgaacaacaaagagattgttgatatgattctcactattttgtccaatagttgacctc 53615578  T
Q  316 ctgatacatattccatcacaatgtatatttttgtttttgtgccaataacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615579 ctgatacatattccatcacaatgtatatttttgtttttgtgccaataacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagg 53615678  T
Q  416 gattgtgaatcttcaagactcacaagaattccaacaccagcaggtataatatacctcatgaattcta 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615679 gattgtgaatcttcaagactcacaagaattccaacaccagcaggtataatatacctcatgaattcta 53615745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University