View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_43 (Length: 479)
Name: NF20633_low_43
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 48497710 - 48498132
Alignment:
| Q |
19 |
gtaaatttagtggatttcatgtgaattttaacaaattaaaaga-gtatgctaaatagtgtgtgttaaaatatttgttattaacatttctcattaaactag |
117 |
Q |
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| T |
48497710 |
gtaaatttagtggatttcatgtgaattttaacaaatcaaaaaaagtgtgc--------gtgtattaaattgtttgttgttagcatttctctttaaactag |
48497801 |
T |
|
| Q |
118 |
acactaacctccctcttattttttgaacaaactaacc--tctctctcttattattatcaaattgacaatcacctccattctaacttaacaccattaaatt |
215 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48497802 |
acactaacctccctcttattttttgaccaaactaacccctctctctcttattattatcaaattgacaatcacctccattctaacttaacaccattaaatt |
48497901 |
T |
|
| Q |
216 |
tcctaactctctcactttcgctcacactaatattaattattttacttcattgttcaatatttttctctccgaggttgtattataagtttcccttttcttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48497902 |
tcctaactctctcactttcgctcacactaatattaattattttacttcattgttcaatatttttctctccgaagttgtattataagtttcccttttcttg |
48498001 |
T |
|
| Q |
316 |
gtgtatgttcattctagcatgttgggtggagagagagnnnnnnnncagaaaaacgaactgaactacttatcgaaccgaactattattaacaattttagaa |
415 |
Q |
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| T |
48498002 |
gtgtaagttcattctagcatgttgggtggagagagaaaaaaaata---aaaaacgaaccgaaccgtttatcgaactgaaccattattaacaattctaaaa |
48498098 |
T |
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| Q |
416 |
atgaactgaaaaaactcagtttgatgtagttttc |
449 |
Q |
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| T |
48498099 |
atgaactgaaaaaactcgatttgatataattttc |
48498132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 40530049 - 40530087
Alignment:
| Q |
20 |
taaatttagtggatttcatgtgaattttaacaaattaaa |
58 |
Q |
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| T |
40530049 |
taaatttagtggatctcctgtgaattttaacaaattaaa |
40530087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 23317985 - 23318023
Alignment:
| Q |
20 |
taaatttagtggatttcatgtgaattttaacaaattaaa |
58 |
Q |
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| T |
23317985 |
taaatttagtggatctcatgtgaattttaaccaattaaa |
23318023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 7403174 - 7403234
Alignment:
| Q |
35 |
tcatgtgaattttaacaaattaaa-agagtatgctaaatagtgtgtgttaaaatatttgtt |
94 |
Q |
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|||||||||||||||| ||| ||| ||||| || | |||||||||||||||||||| |||| |
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| T |
7403174 |
tcatgtgaattttaaccaatcaaagagagtgtgttgaatagtgtgtgttaaaatatgtgtt |
7403234 |
T |
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