View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_47 (Length: 468)
Name: NF20633_low_47
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_47 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 449
Target Start/End: Original strand, 5732376 - 5732810
Alignment:
| Q |
14 |
agaccaatcattattaccaattttcaaactacagaagcaacaaaacatgcgcacagcagtacaattgttagggtgaagctgagcaggagaaaagttcaac |
113 |
Q |
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| T |
5732376 |
agaccaatcattattaccaattttcaaactacagaagcaacaaaacatgc-cacagcagtacaattgttagggtgaagctgagcaggagaaaagttcaac |
5732474 |
T |
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| Q |
114 |
cattgcatcacctcacattcaaagttgaagaaagaaagcctaagatttaacctaaaaacatataatgtctgataaaagtagcaataatccagtttacaac |
213 |
Q |
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| T |
5732475 |
cattgcatcacctcacattcaaagttgaagaaagaaagcctaagatttaacctaaaaacatataatgtctgataaaagtagcaataatccagtttactac |
5732574 |
T |
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| Q |
214 |
gagaatttcttgaatagcttataataacaattttttgtttgccaattatttgaaacaaaacgaataaaaagctaaccgagaaattagctagaggaatgaa |
313 |
Q |
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| T |
5732575 |
gagaattttttgaatagcttataataacaatcttttgtttgccaattatttgaaacaaaacgaataaaaagctaaccgagaaattagctagaggaatgaa |
5732674 |
T |
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| Q |
314 |
gcttgaagcactacgaattcaatcgtacaaatagaagcaaaatacacaaccatgaaatacttctaaaatcattgttaaaatccaagggttctgtgtaatc |
413 |
Q |
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| T |
5732675 |
gcttgaagcactacgaattcaatcgtacaaatagaagcaaaatacacaaccatgaaatacttctaaaatcattgttaaaatccaagggttctgtgtaatc |
5732774 |
T |
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| Q |
414 |
ccatgacatctaacaattcaggttttaccatagaga |
449 |
Q |
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| T |
5732775 |
ccatgacatctaacaattcaggttttaccatagaga |
5732810 |
T |
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Back To:
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Target: scaffold0047 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 281
Target Start/End: Complemental strand, 63015 - 62890
Alignment:
| Q |
153 |
ctaagatttaacctaaaaacatataatgtctgataaaagtagcaataatccagtttacaacgagaatttcttgaatagcttataataacaattttttgtt |
252 |
Q |
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| T |
63015 |
ctaagatttaacctaataa---ataatgtcggataaaagtagcaataattcagtttactaggagaattttctaaatagcttataataacaatattttgcc |
62919 |
T |
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| Q |
253 |
tgccaattatttgaaacaaaacgaataaa |
281 |
Q |
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| T |
62918 |
tgtcaattatgtgaaactgaacgaataaa |
62890 |
T |
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