View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_48 (Length: 468)
Name: NF20633_low_48
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 48778556 - 48778937
Alignment:
| Q |
1 |
aatattaacaatatgatatgatcattctagtgattactgctcagttagtctcatattaagcgtagttatgcatataaaaagtaattttgaatatatttat |
100 |
Q |
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| T |
48778556 |
aatattaacaatatgatatgatcattctagtgattactgctcagttagtctcatattaagtgtagttatgcatataaaaagtaattttgaatatatttat |
48778655 |
T |
|
| Q |
101 |
acgcaaaagacaattttgcactttttcaaggcatacaaaatatgcacataaaacattggttatactatcaaattttctaatatatatgttagaagtgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48778656 |
acgcaaaagacaattttgcactttttcaaggcatacaaaatatgcacataaaacattggttatactatcaaattttctaatatatatgttagaagtgaaa |
48778755 |
T |
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| Q |
201 |
gacgagcttataaaagggaagtaagaataagtcgtagttaggggtggagtaacaagaaaggttaaaatacaaataaaaaagac--gtttgtcc-nnnnnn |
297 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48778756 |
gacgagcttataaaagggaagtaagaataaatcgtagttaggggtggagtaacaagaaaggttaaaatacaaataaaaaagacgtgtttgtccaaaaaaa |
48778855 |
T |
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| Q |
298 |
nnctaatttgtgtttcgttggtatgctaaaataagg-aaatgatcggtagactactcgtattttcatatcacccatacaccc |
378 |
Q |
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| T |
48778856 |
aactaatttatgtttcgttggcattctaaaataaggaaaatgattggtagactactcgtatcttcttatcactcatacaccc |
48778937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 3780279 - 3780324
Alignment:
| Q |
334 |
aaatgatcggtagactactcgtattttcatatcacccatacacccc |
379 |
Q |
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| T |
3780279 |
aaatgattggtagaccactcatattttcataccacccatacacccc |
3780324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 25955880 - 25955925
Alignment:
| Q |
334 |
aaatgatcggtagactactcgtattttcatatcacccatacacccc |
379 |
Q |
| |
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||||||| ||||||| |||| || |||||||||||||||||||||| |
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| T |
25955880 |
aaatgattggtagaccactcataatttcatatcacccatacacccc |
25955925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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