View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_51 (Length: 447)
Name: NF20633_low_51
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 34927891 - 34928317
Alignment:
| Q |
1 |
agaaaaacgattttattcctccaacaactttttaaaaaccgatcacgtccataagtattcatcaagacaggnnnnnnnntgtattatcccgtccaaatgt |
100 |
Q |
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| T |
34927891 |
agaaaaacaattttattcctccaacaactttttaaaaaccaatcacgtccataagtatccatcgagacaggaaaaaaa-tgtattatcccatccaaatgt |
34927989 |
T |
|
| Q |
101 |
ctacttctggacggggtcgattttaaagaatcatgagagtaagaaaatggttcctatataatatgatgtgggtgtagagaacataaagatgcagggggtc |
200 |
Q |
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| T |
34927990 |
ctacttctggacggggtcgattttaaagaatcatgagagtaagaaaatggttcctatataatatgatatgggtgcagagaacataaagatgcagggg-tc |
34928088 |
T |
|
| Q |
201 |
ccaagtatataagatatgcaaagaagatgtacgaccaacattctaattcaaaaatgtaatcaagaatggtaacccatggccctgcccattggtggttgct |
300 |
Q |
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| T |
34928089 |
ccaagtatataagatatgcaaagaagatgtacgaccaacattctaattcaaaaatgtaatcaagaatggtaacccatggccctgcccattggtggttgct |
34928188 |
T |
|
| Q |
301 |
tgctttgtaattagctaggatcacatgaatctattcgtgttccaaatagacaaggccatgtgagctgtgctttgatcctgtttctgattttctttttggt |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34928189 |
tgctttgttattagctaggatcacatgaatctattcgtgttccaaatagacaaggccatgtgagctgtgctttgatcctgtttctgattttctttttggt |
34928288 |
T |
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| Q |
401 |
cctgttatgctgaccaggatggtataaag |
429 |
Q |
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| T |
34928289 |
cctgttatgctgactaggatggtataaag |
34928317 |
T |
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