View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_52 (Length: 446)

Name: NF20633_low_52
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_52
NF20633_low_52
[»] chr5 (13 HSPs)
chr5 (16-446)||(10212829-10213276)
chr5 (16-295)||(10105150-10105449)
chr5 (288-445)||(9677191-9677348)
chr5 (297-445)||(12105294-12105442)
chr5 (340-446)||(9683918-9684023)
chr5 (195-341)||(9675522-9675660)
chr5 (339-441)||(10211009-10211111)
chr5 (21-114)||(9675302-9675395)
chr5 (114-171)||(9683324-9683380)
chr5 (118-174)||(9675430-9675486)
chr5 (77-113)||(10102593-10102629)
chr5 (197-283)||(9683423-9683509)
chr5 (197-279)||(10210638-10210720)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 10212829 - 10213276
Alignment:
Q  16 aagattgtgttgatggtattacaaatgatggatctaggataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttacatatgaca- 114  Q
    |||||||||||||||| |||||||| ||||||||    |||||||||||| |||||||||  |||||||||||||||||||||||||||| | ||||||     
T  10212829 aagattgtgttgatggaattacaaaggatggatc----ataagctgatctaacacctttacgcaactcagtcacctgcaacattcgtttaaaaatgacaa 10212924  T
Q  115 -gatgaaattgctttgcacttgggggattttcaacctcatttcttctcaaaaatattatattagtataaacatatcaaaga------------------c 195  Q
     ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||                  |    
T  10212925 agatgaaattgctttgcacttgggggatattcaacctcatctcttctcaaaaatattatattagtataaacatatctaagaatgatttatgtaccttatc 10213024  T
Q  196 cataagcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaatttgcaatattt 295  Q
    ||||||||||||||||||  ||||||  |||||| |||||  |||| ||||||| |||||||| ||||||||||  ||||||||||||||||||||||||    
T  10213025 cataagcagagaaataacaggcattcgacgaacctgattcagaaaattttaagatgtaaataaacatataagtttaacaaaacaacaatttgcaatattt 10213124  T
Q  296 caagagaatgaaattaaggtatttagaaattttaagaaacggcctcataaat-cctttaaaacttaaataaatgcaacctttgacagaagcacgacaaca 394  Q
     |||||||||||||| || ||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| | |||    
T  10213125 aaagagaatgaaatttagatatttagaaattttaagaaacggccgcctaaatccctttaaaacttaaataaatgcaacctttgacagaagcacggcgaca 10213224  T
Q  395 aaaggcttgtgttagttctccttcaccataaataggataaagtaaagccccc 446  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  10213225 aaaggcttgtgttagttctccttcaccatagataggataaagcaaagccccc 10213276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 10105449 - 10105150
Alignment:
Q  16 aagattgtgttgatggtattacaaatgatggatctaggataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttacatatgaca- 114  Q
    |||||||||||||||||||||| || || ||||| || ||||||||||||||||||| || |||||||||||||||||||||||| |||| | ||||||     
T  10105449 aagattgtgttgatggtattacgaaggaaggatccag-ataagctgatctgacacctgtacacaactcagtcacctgcaacattcatttaaaaatgacaa 10105351  T
Q  115 -gatgaaattgctttgcacttgggggattttcaacctcatttcttctcaaaaatattatattagtataaacatatcaaaga------------------- 194  Q
     ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||  ||||                       
T  10105350 agatgaaattgctttgcacttgcgggatattcaacctcatctcttctcaaaaatattatattagtctaaacatatgtaagaattatttctgtacactcat 10105251  T
Q  195 ccataagcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaatttgcaatatt 294  Q
    |||||||||||||||||||  |||||  ||||||| ||||| ||||| ||||||| ||| ||||||||| | |||| |||||||||||||||||||||||    
T  10105250 ccataagcagagaaataacaggcatttggcgaacctgattcacaaaattttaagatgtacataagcatacatgttcaacaaaacaacaatttgcaatatt 10105151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 288 - 445
Target Start/End: Original strand, 9677191 - 9677348
Alignment:
Q  288 caatatttcaagagaatgaaattaaggtatttagaaattttaagaaacggcctcataaatcctttaaaacttaaataaatgcaacctttgacagaagcac 387  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||  ||||||||||| || |     
T  9677191 caatatttaaagagagtgaaattaaggtatttataaattttaagaaacagcctcataaatcctttaaaacttacataaatgtgacctttgacagcagtat 9677290  T
Q  388 gacaacaaaaggcttgtgttagttctccttcaccataaataggataaagtaaagcccc 445  Q
    |||  || || ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  9677291 gacggcagaaagcttgtgttggttctccttcaccataaataggataaagcaaagcccc 9677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 297 - 445
Target Start/End: Original strand, 12105294 - 12105442
Alignment:
Q  297 aagagaatgaaattaaggtatttagaaattttaagaaacggcctcataaatcctttaaaacttaaataaatgcaacctttgacagaagcacgacaacaaa 396  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||| |||||| || || || |||||    
T  12105294 aagagaatgaaattaagatatttagaaattttaagaaacagcctcataaatcctttaaaacatacataaatgcgacctatgacagcagtacaacgacaaa 12105393  T
Q  397 aggcttgtgttagttctccttcaccataaataggataaagtaaagcccc 445  Q
    |||||| | |||||||||||||||||||| |||||||||| ||||||||    
T  12105394 aggcttcttttagttctccttcaccataagtaggataaagcaaagcccc 12105442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 340 - 446
Target Start/End: Original strand, 9683918 - 9684023
Alignment:
Q  340 tcataaatcctttaaaacttaaataaatgcaacctttgacagaagcacgacaacaaaaggcttgtgttagttctccttcaccataaataggataaagtaa 439  Q
    |||||||||||||||| |||| |||||||||||||||||||| |||||||| |||||| ||||||| |||||| ||||||||||||||||||||||| ||    
T  9683918 tcataaatcctttaaa-cttacataaatgcaacctttgacagcagcacgacgacaaaaagcttgtggtagttccccttcaccataaataggataaagcaa 9684016  T
Q  440 agccccc 446  Q
    |||||||    
T  9684017 agccccc 9684023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 341
Target Start/End: Original strand, 9675522 - 9675660
Alignment:
Q  195 ccataagcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaatttgcaatatt 294  Q
    ||||||||||||| |||||| ||||||  |||||| ||||| ||||||||||||| |||||||||||||||||||        ||||||| |||||||||    
T  9675522 ccataagcagagatataaccggcattcgtcgaacctgattcacaaaagtttaagatgtaaataagcatataagtt--------caacaatatgcaatatt 9675613  T
Q  295 tcaagagaatgaaattaaggtatttagaaattttaagaaacggcctc 341  Q
      ||||||||||||||||||||||| ||||||| |||||| ||||||    
T  9675614 aaaagagaatgaaattaaggtatttggaaatttaaagaaaaggcctc 9675660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 339 - 441
Target Start/End: Original strand, 10211009 - 10211111
Alignment:
Q  339 ctcataaatcctttaaaacttaaataaatgcaacctttgacagaagcacgacaacaaaaggcttgtgttagttctccttcaccataaataggataaagta 438  Q
    |||||||||||| ||||||||| ||||||||||||||||| || |||||||| |||||| ||||||  ||||| ||||||||||||||||||| ||||||    
T  10211009 ctcataaatcctataaaacttacataaatgcaacctttgatagcagcacgacgacaaaaagcttgtcgtagttttccttcaccataaataggacaaagta 10211108  T
Q  439 aag 441  Q
    |||    
T  10211109 aag 10211111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 9675302 - 9675395
Alignment:
Q  21 tgtgttgatggtattacaaatgatggatctaggataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttacatatgaca 114  Q
    ||||||||||| |||||||| |||||||| ||||||| ||||||| ||||||| |||| ||||||| | |||| ||||| ||||| | ||||||    
T  9675302 tgtgttgatggaattacaaaggatggatccaggataaactgatctaacaccttcatacgactcagtgatctgcgacattagtttaaaaatgaca 9675395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 9683324 - 9683380
Alignment:
Q  114 agatgaaattgctttgcacttgggggattttcaacctcatttcttctcaaaaatatta 171  Q
    ||||||||||||||||||||| |||||| ||||||||| | |||| ||||||||||||    
T  9683324 agatgaaattgctttgcactt-ggggatattcaacctcgtctcttatcaaaaatatta 9683380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 9675430 - 9675486
Alignment:
Q  118 gaaattgctttgcacttgggggattttcaacctcatttcttctcaaaaatattatat 174  Q
    ||||||||||||||||| |||||| ||||||||| | ||||||||||| || |||||    
T  9675430 gaaattgctttgcacttcggggatattcaacctcgtctcttctcaaaattaatatat 9675486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 10102629 - 10102593
Alignment:
Q  77 acaactcagtcacctgcaacattcgtttacatatgac 113  Q
    ||||||||||||||||||||||||||||||| |||||    
T  10102629 acaactcagtcacctgcaacattcgtttacaaatgac 10102593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 9683423 - 9683509
Alignment:
Q  197 ataagcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaa 283  Q
    |||||||| ||||||||| |||||| | ||||| ||| | | ||||||||||| | | ||||||||||| ||||  |||||||||||    
T  9683423 ataagcagggaaataaccggcattctgagaacctgatacacgaaagtttaagatgcatataagcatatatgttcagcaaaacaacaa 9683509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 10210638 - 10210720
Alignment:
Q  197 ataagcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaaca 279  Q
    ||||||||| ||||||| ||||||| | ||||| ||||| ||||||||||||| ||  ||||||| ||| |||  ||||||||    
T  10210638 ataagcagataaataacaagcattctgagaacctgattcacaaaagtttaagatgtgtataagcacatatgtttaacaaaaca 10210720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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