View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_low_53 (Length: 444)
Name: NF20633_low_53
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_53 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 28412248 - 28411823
Alignment:
| Q |
1 |
aattttattccttaattaaaaacacggcaagtaagcattcttgaaattcgtgggttgaccctttgtagtatttagcaattctcttttatgatattttatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28412248 |
aattttattccttaattaaaaacacggcaagtaagcattcttgaaattcgtgggttgaccctttgtagtatttagcaattctcttttatgatattttatg |
28412149 |
T |
|
| Q |
101 |
aaatctaatgatttagattagttggtgaaatagtttgcaattttgttcagaattcagattatgggttgtgaaatgtgaatggaaaattgcttagttgaat |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28412148 |
aattctaatgatttagattagttggtgaaatagtttgcaattttgttcagaattcagattatgggttgtgaaatgtgaacggaaaattgcttagttgaat |
28412049 |
T |
|
| Q |
201 |
ctaatttgtttgttttcttgtagatctgtagaaggataggatctatgatttgtatttgtaacaaattggctactttgttgatgctgatttattaatctta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
28412048 |
ctaatttgtttgttttcttgtagatctgtagaaggataggatctatgatttgtatttgtaacaaattggctgctttgttgatgctgaattattaatctta |
28411949 |
T |
|
| Q |
301 |
ttagtttatagtctcattctataatcatgatcatttcttatccattttgtgtgacaatggttgggatttattcagacctgcgaattgtgatcatagaaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28411948 |
ttagtttatagtctcattctataatcatgatcatttcttatccattttgtgtgacaatggttgggatttatttagacctgcgaattgtgatcatagaaac |
28411849 |
T |
|
| Q |
401 |
ataatacagtattctgatcctctctg |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28411848 |
ataatacagtattctgatcctctctg |
28411823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 40727576 - 40727492
Alignment:
| Q |
3 |
ttttattccttaattaaaaacacggcaagtaagcattcttgaaattcgtgggttgaccctttgtagtatttagcaattctctttt |
87 |
Q |
| |
|
|||| ||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
40727576 |
tttttttctttaattaaaaacacgacaagtaagcattcttagaattcgtgggttgatccttcgtagtatttagcaattctctttt |
40727492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University