View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_56 (Length: 435)
Name: NF20633_low_56
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 394
Target Start/End: Complemental strand, 55003476 - 55003095
Alignment:
| Q |
13 |
aaaatccaatcctttcacgagtttcnnnnnnncattggaagaaaatttaggtaagaggcttccgagaacgttctccatctctttagggtatttaccaaat |
112 |
Q |
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| T |
55003476 |
aaaatccaatcctttcatgagtttctttttttcattggaagaaaatttaggtaagaggcttccaagaacgttctccatctctttagggtatttaccaaat |
55003377 |
T |
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| Q |
113 |
atgattgggtccaaaatcctgtatttttatttgagtatatttacactatgaggctctcatctttatacttcgagtgaatcaatagaaaaagctactatat |
212 |
Q |
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| T |
55003376 |
atgattgggtccaaaatcctgtatttttatttgagtatatttacactatgaggctctcatctttatactttgagtgaatcaatagaaaaagctactatat |
55003277 |
T |
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| Q |
213 |
tagtatttaaaggagaattataccaattgaaggtgaatgatcttgctctttcagcagccaatttgtcagcagtagagttgctcattggttcataccattc |
312 |
Q |
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| T |
55003276 |
tagtatttaaaggagaattataccaattgaaggtgaatgatcttgctctttcagcagccaatttgtcagcattagagttgctcattggttcataccattc |
55003177 |
T |
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| Q |
313 |
atatgaaatcactattccaattcttcctttctgctcagcctgatatgtttcacttttaaaatacgatgttttacaatcaaat |
394 |
Q |
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| T |
55003176 |
atgtgaaatcactattccaattcttcctttctgctcagcctgatatgtttcacttttaaaatacgatgttttacaatcaaat |
55003095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 417
Target Start/End: Complemental strand, 55003094 - 55003063
Alignment:
| Q |
386 |
caatcaaataactataattcgtatgatttgag |
417 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
55003094 |
caatcaaataactataattcgtatgatttgag |
55003063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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