View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_58 (Length: 433)
Name: NF20633_low_58
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 34216554 - 34216976
Alignment:
| Q |
1 |
ctttgctcccaggtatgagaattagaaaaaacttagtgaatggtgattataaaggtttggtatcttggagggatacacaagatcctgctactggtttgta |
100 |
Q |
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||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216554 |
ctttgctcccaggtatgagtattagaacaaacttagtaaatggtgattataaaggtttggtatcttggagggatacacaagatcctgctactggtttgta |
34216653 |
T |
|
| Q |
101 |
ttcatatcatatagatactaatggttatcctcaagtagtgattacaaaaggagatacattattctttagaataggttcatggaatggaagaattttatca |
200 |
Q |
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| T |
34216654 |
ttcatatcatatagatactaatggttatcctcaagtagtgattacaaaaggagatacattattctttagaataggttcatggaatggaagaattttatca |
34216753 |
T |
|
| Q |
201 |
ggaattccttctgagacactttacaaagcctataacttttcatttgtgattactgagaaggaaatttcttatggatatgaacttttgaacaagtctgttg |
300 |
Q |
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| T |
34216754 |
ggaattccttctgagacactttacaaagcctataacttttcatttgtgattactgagaaggaaatttcttatggatatgaacttttgaacaagtctgttg |
34216853 |
T |
|
| Q |
301 |
tttcaagatacttggtatcttcaactggtcaaatagcgcgatacatgttgtcgaatcagacaaatagttggcaacttttctttgtcggacctgcagacag |
400 |
Q |
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| T |
34216854 |
tttcaagatacttggtatcttcaactggtcaaatagcgcgatacatgttgtcggatcagacaaatagttggcaacttttctttgtcggacctgcagacag |
34216953 |
T |
|
| Q |
401 |
ttgtgataattatgctatctgtg |
423 |
Q |
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| T |
34216954 |
ttgtgataattatgctatctgtg |
34216976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 34195014 - 34194638
Alignment:
| Q |
9 |
ccaggtatgagaattagaaaaaacttagtgaatggtgattataaaggtttggtatcttggagggatacacaagatcctgctactggtttgtattcatatc |
108 |
Q |
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| T |
34195014 |
ccaggtatgagaattagaagtaacttattaactggaaattatacaagtttggtatcttggcgagacacgcaagatcctgctactggtttgtattcatatc |
34194915 |
T |
|
| Q |
109 |
atatagatactaatggttatcctcaagtagtgattacaaaaggagatacattattctttagaataggttcatggaatggaagaattttatcaggaattcc |
208 |
Q |
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| T |
34194914 |
atatagatattaatggttatcctcaagtagtgattaaaaaaagaaacacattattatttagagtaggttcatggaatggaaattttttatccggaatctc |
34194815 |
T |
|
| Q |
209 |
ttctgagacactttacaaagcctataacttttcatttgtgattactgagaaggaaatttcttatggatatgaacttttgaacaagtctgttgtttcaaga |
308 |
Q |
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|||| ||| ||||||||| ||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
34194814 |
ttctacgacgctttacaaatccttcaatatttcatttgtgattactgaaaaggaagtttcttatggatatgaacttttggacaagtccattgtttcaagg |
34194715 |
T |
|
| Q |
309 |
tacttggtatcttcaactggtcaaatagcgcgatacatgttgtcgaatcagacaaatagttggcaacttttctttgt |
385 |
Q |
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||| || || || ||| |||||| || |||| ||||||||||| |||||||||| |||||||||||| ||||||| |
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| T |
34194714 |
tacatgctaactccaatcggtcaagtatcgcgttacatgttgtccgatcagacaaagagttggcaacttgtctttgt |
34194638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 34205129 - 34205415
Alignment:
| Q |
1 |
ctttgctcccaggtatgagaattagaaaaaacttagtgaatggtgattataaaggtttggtatcttggagggatacacaagatcctgctactggtttgta |
100 |
Q |
| |
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|||| ||||||||||||| ||| |||| |||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||| |||||||||| || |
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| T |
34205129 |
ctttactcccaggtatgaaaatcagaagcaacttagtaaatggtgatattaaaggtttggtatcttggagagatacacatgatccttctactggtttata |
34205228 |
T |
|
| Q |
101 |
ttcatatcatatagatactaatggttatcctcaagtagtgattacaaaaggagatacattattctttagaataggttcatggaatggaagaattttatca |
200 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||| | |||| | | |||||||||||||||||||||| || ||| | |
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| T |
34205229 |
ttcatatattatagatactaatggtttacctcaagtagtgattacaaaaggaaactcattttatgtcagaataggttcatggaatggaaatatgttaact |
34205328 |
T |
|
| Q |
201 |
ggaattccttctgagacactttacaaagcctataacttttcatttgtgattactgagaaggaaatttcttatggatatgaacttttg |
287 |
Q |
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|||||||||||| ||| |||||| | || ||| || | ||| | ||||||||| |||| ||||||||||||||||||||||| |
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| T |
34205329 |
ggaattccttctacgacgctttactcaaactttaatttcacttttttttttactgagacggaagtttcttatggatatgaacttttg |
34205415 |
T |
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