View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_low_60 (Length: 431)
Name: NF20633_low_60
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_60 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 31 - 380
Target Start/End: Original strand, 5120652 - 5120985
Alignment:
| Q |
31 |
tttcatcaaatacataataactatttttcatccacaagtaagatacatgcacaatannnnnnn-cattaaatcttgtttgtaacaaatagtaaagctctn |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5120652 |
tttcatcaaatacataataactatttttcatccacaagtaagatacatgcacaatattttttttcattaaatcttgtttgtaacaaatagtaaagctcta |
5120751 |
T |
|
| Q |
130 |
nnnnnntattactaacaaaagaagatgtttgctagagatgctaaagaaaagaaatccaacaagaaaataatatgtaatgacagtcacatgtaacgtacct |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5120752 |
aaaaaatattactaacaaaagaagatgtttgctagagatgctaaaga-----------------aaataatatgtaatgacagtcacatgtaacgtacct |
5120834 |
T |
|
| Q |
230 |
gtaaaaatactgcaatagtaccaacagtattccataataaaggtccaagtccctcaaataacttggtgctctgaaatataataaatgcaacataatgtat |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5120835 |
gtaaaaatactgcaatagtaccaacagtattccataataaaggtccaagtccctcaaataacttggtgctctgaaatataataaatgcaacataatgtat |
5120934 |
T |
|
| Q |
330 |
taattgtatgagtttcagcaacattaacgaatactactgaaattttagtat |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5120935 |
taattgtatgagtttcagcaacattaacgaatactactgaaattttagtat |
5120985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 431
Target Start/End: Original strand, 5121008 - 5121036
Alignment:
| Q |
403 |
catatcatacatgtaataagctattattc |
431 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5121008 |
catatcatacatgtaataagctattattc |
5121036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 365
Target Start/End: Complemental strand, 9516914 - 9516753
Alignment:
| Q |
204 |
taatgacagtcacatgtaacgtacctgtaaaaatactgcaatagtaccaacagtattccataataaaggtccaagtccctcaaataacttggtgctctga |
303 |
Q |
| |
|
||||| ||||||||| | || |||||||| || || ||||||||||||| || ||||||||||||||| ||||| | ||||||| || | || ||| |
|
|
| T |
9516914 |
taatgtcagtcacatattacatacctgtacaagtattgcaatagtaccataagaattccataataaaggagcaagttctggaaataacctgatcctttga |
9516815 |
T |
|
| Q |
304 |
aatataataaatgcaacataatgtattaattgtatgagtttcagcaacattaacgaatacta |
365 |
Q |
| |
|
|| ||| ||||| || |||| |||||||||| |||||||| |||||||||| |||| |||| |
|
|
| T |
9516814 |
aacttaaaaaatgaaaaataaagtattaattgcatgagtttgagcaacattatcgaaaacta |
9516753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 45158942 - 45158888
Alignment:
| Q |
225 |
tacctgtaaaaatactgcaatagtaccaacagtattccataataaaggtccaagt |
279 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
45158942 |
tacctgtaaaagtactgcaatagtaccaaaagaattccataataaaggtgcaagt |
45158888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 355
Target Start/End: Original strand, 40818694 - 40818845
Alignment:
| Q |
204 |
taatgacagtcacatgtaacgtacctgtaaaaatactgcaatagtaccaacagtattccataataaaggtccaagtccctcaaataacttggtgctctga |
303 |
Q |
| |
|
||||| ||||| ||| | || ||| |||||||||| ||||||||||||| || |||||||||||||||| ||||| || ||||||| || |||||| |
|
|
| T |
40818694 |
taatgtcagtcgcatattacatacttgtaaaaatattgcaatagtaccataagaattccataataaaggtgcaagttccggaaataac-ccgtcctctga |
40818792 |
T |
|
| Q |
304 |
aatataa-taaatgcaacataatgtattaattgtatgagtttcagcaacatta |
355 |
Q |
| |
|
|| ||| ||||| || |||| |||||| ||| |||||||| |||||||||| |
|
|
| T |
40818793 |
aacttaacaaaatgaaaaataaagtattagttgcatgagtttgagcaacatta |
40818845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University