View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_low_61 (Length: 424)
Name: NF20633_low_61
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_61 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 4 - 401
Target Start/End: Complemental strand, 5887173 - 5886776
Alignment:
| Q |
4 |
atgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcgg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887173 |
atgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcgg |
5887074 |
T |
|
| Q |
104 |
gataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtattccttgaatgtggttgttatgaaggtcaatatataaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887073 |
gataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtattccttgaatgtggttgttatgaaggtcaatatataaa |
5886974 |
T |
|
| Q |
204 |
aggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5886973 |
aggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgg |
5886874 |
T |
|
| Q |
304 |
gcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
401 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5886873 |
gcagaactccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
5886776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 5 - 401
Target Start/End: Original strand, 5612836 - 5613235
Alignment:
| Q |
5 |
tgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcggg |
104 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
5612836 |
tgaagctttgcagagggaatgagggatgcttccttgtaaactattatttgaaagagatagaaaccatgcagaagacaggtaattaccaatatcatgcggg |
5612935 |
T |
|
| Q |
105 |
ataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggta---ttccttgaatgtggttgttatgaaggtcaatatata |
201 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || | ||||| ||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
5612936 |
ataacagagaatttgttggttgagtaatccaaatatctaatagattcagaaaaaacaggtattgttccttgaatttggttgttatgaaggtcaataagat |
5613035 |
T |
|
| Q |
202 |
aaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagtt |
301 |
Q |
| |
|
||||||||||| |||||||||| || | ||||||| ||||||||||||||||||||||||||||| | || |||| ||||||| || ||||||| || |
|
|
| T |
5613036 |
gaaggttggaagtaatattttgcaaacaaccttccaactctgtgagaaaattgtgtgaaatattaagctgttcaagactttgtagtttccaaatccaatt |
5613135 |
T |
|
| Q |
302 |
gggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
401 |
Q |
| |
|
|||| || ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
5613136 |
tggcacaactccttgaatttggttggctgaaaggtctagattttccaatgttgattgatttctcaagaatataggaaaagttttcaggttgcaggatgcc |
5613235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 5 - 399
Target Start/End: Complemental strand, 5896017 - 5895623
Alignment:
| Q |
5 |
tgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcggg |
104 |
Q |
| |
|
|||||| ||| | ||||||| ||||||| |||| |||||| ||||||| |||||||||||| || | || |||||| |||||||||||||||||| ||| |
|
|
| T |
5896017 |
tgaagctttgaagagggaatgagggatggttccatgtaaattattatttgaaagagatagatacaatatggaagacaagtaattaccaatatcatgtggg |
5895918 |
T |
|
| Q |
105 |
ataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtatt---ccttgaatgtggttgttatgaaggtc-aatatat |
200 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| | || | ||||| |||||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
5895917 |
ataacagagaatttattggttgagtaatccaaatactgaataaattcaggaaaaacaggtattgttccttgaatttggttgttatgaaggtctaataccc |
5895818 |
T |
|
| Q |
201 |
aaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagt |
300 |
Q |
| |
|
||| |||||| || ||||||| |||| ||||||| |||||||||||||||||||||||||||||| | ||||||| |||||| || ||||||| | |
|
|
| T |
5895817 |
aaa----tggaagtaagattttgcaaagaaccttccaattctgtgagaaaattgtgtgaaatattaagttgttgaagactctgtagtttccaaatccaat |
5895722 |
T |
|
| Q |
301 |
tgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatg |
399 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5895721 |
tgggcactgctccttgaatttggttatgtgaaaggtctagagatagcaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatg |
5895623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 5 - 401
Target Start/End: Complemental strand, 5848956 - 5848557
Alignment:
| Q |
5 |
tgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcggg |
104 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||| ||||||| ||||||||||||||||| ||| |
|
|
| T |
5848956 |
tgaagctttgcagagggaatgagggatgcttccttgtaaactattatttgaaagagatagaaaatttgtggaagacagataattaccaatatcatgtggg |
5848857 |
T |
|
| Q |
105 |
ataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggta---ttccttgaatgtggttgttatgaaggtcaatatata |
201 |
Q |
| |
|
||| ||||||| |||||||| ||||||||||| |||||| | ||||| ||||||||| || |||||| | |||||||||||||||||||| | | |
|
|
| T |
5848856 |
ataccagagaaattgttggttgagtaatccaagcattcaatagattcaggaaaaacagatactgatccttgtagttggttgttatgaaggtcaattaaaa |
5848757 |
T |
|
| Q |
202 |
aaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattg-aagaacttgtagtgtcaaaatccagt |
300 |
Q |
| |
|
||||||||||| |||||||||| |||| ||||||| ||||||||||||||||| |||||||| || ||| || |||| || |||| || ||||||| | |
|
|
| T |
5848756 |
taaggttggaagtaatattttgcaaagaaccttccaattctgtgagaaaattgtatgaaatatcaa-gtagtgaaagactttttagtttccaaatccaat |
5848658 |
T |
|
| Q |
301 |
tgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgc |
400 |
Q |
| |
|
|||| | | |||||||||||||||| ||| |||| ||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
5848657 |
tgggtaccactccttgaatttggttagctgaaaggtttagatatcccaatgttgattgatttttcaggaatctagggaaagtttgcaagttgcaggatgc |
5848558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 5 - 401
Target Start/End: Original strand, 5604721 - 5605117
Alignment:
| Q |
5 |
tgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcggg |
104 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||||| ||||||| |||||||||| ||| || |||| |||||||| ||||||||||| ||| |
|
|
| T |
5604721 |
tgaagctttgcagagggaatgagggatgcttccttgtaaattattatttgaaagagatataaaaaatgcagaagaaaggtaattgccaatatcatgtggg |
5604820 |
T |
|
| Q |
105 |
ataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtat---tccttgaatgtggttgttatgaaggtcaa-tatat |
200 |
Q |
| |
|
|||||||| || ||||| || |||||||||||| || ||| | ||||| ||||||||||||| |||||| | ||||||||||||||||| | || |
|
|
| T |
5604821 |
ataacagaaaaattgtttgttgagtaatccaaaaatccaatagattcaggaaaaacaggtatgcatccttgtagttggttgttatgaaggtctactaccc |
5604920 |
T |
|
| Q |
201 |
aaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagt |
300 |
Q |
| |
|
||| |||||| || ||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| || ||||||| | |
|
|
| T |
5604921 |
aaa----tggaagtaagattttgcaaagaaccttccaattctgtgagaaaattgtgtgaaatattaagccattgaagactttgtagtttccaaatccaat |
5605016 |
T |
|
| Q |
301 |
tgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgc |
400 |
Q |
| |
|
| |||| | ||||||||| | ||||| ||| ||||||||| || |||||||||||||| ||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
5605017 |
tcggcactactccttgaatgttgttatctgaaaggtctagagatatcaatgttgattgattcatcaagaatctagggaaactttgtatgttgcaggatgc |
5605116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 5857379 - 5857767
Alignment:
| Q |
13 |
tgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcgggataacaga |
112 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||| |||||||| || | |||||| || |
|
|
| T |
5857379 |
tgcagagggaatgagggatgtttccttgtaaattattatttgaaagagatagaaactttgtggaagacaggtaattgccaatatcttgtgagataactga |
5857478 |
T |
|
| Q |
113 |
gaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtatt---ccttgaatgtggttgttatgaaggtc-aatatataaaaggtt |
208 |
Q |
| |
|
|||||||| || |||||||||||||| ||| | ||| | |||||| |||||| || |||| ||||||||||||||||| ||||| ||| | |
|
|
| T |
5857479 |
aaatttgtttgttgagtaatccaaataatcagaagatttagaaaaaactggtattgacccctgaagttggttgttatgaaggtctaatatccaaa----t |
5857574 |
T |
|
| Q |
209 |
ggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcaga |
308 |
Q |
| |
|
||||| || ||||||| || ||||||| || | | | ||||||| |||||||||||| ||||||| | ||||| || ||||||| || || | |
|
|
| T |
5857575 |
ggaagtaagattttgcataggtccttccaagtcgataaaagaattgtgagaaatattaaggacttgaagatatggtagtttccaaatccaatttggtact |
5857674 |
T |
|
| Q |
309 |
attccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
401 |
Q |
| |
|
||||| ||||| ||||||| ||| ||||||||| || | ||| | ||||| ||| ||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
5857675 |
attccatgaatctggttatctgaaaggtctagaatggtcaatctggattggtttatcaagaaactagggatagttttcaagttgcaggatgcc |
5857767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 395
Target Start/End: Original strand, 3748220 - 3748613
Alignment:
| Q |
5 |
tgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcggg |
104 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||||||||||| || |||| ||| ||||| | |||| |||| ||||||||||||||||| | ||| |
|
|
| T |
3748220 |
tgaagcattgcataaagaatcagggatgcttccatgtaaactattgttggaaaaagagagaaaatatgtggaagataggtaattaccaatatcttctggg |
3748319 |
T |
|
| Q |
105 |
ataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtatt---ccttgaatgtggttgttatgaaggtcaatatata |
201 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||| | ||| |||||||| ||||||| ||||| | | ||||||||||||||||| | | |
|
|
| T |
3748320 |
ataacagaaaatttgttggtagagtaatccaaatattcaacagatttaagaaaaaaaggtattggtccttgcagtttgttgttatgaaggtcaagaattt |
3748419 |
T |
|
| Q |
202 |
aaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagtt |
301 |
Q |
| |
|
|| ||||| | ||||||| ||| ||||||| | ||||||| |||||| ||||||||||| || ||| | | ||| || ||| ||| || |
|
|
| T |
3748420 |
cccagtaggaagtgagattttgcaaaggtccttccaaatgagtgagaagattgtgagaaatattaagagcttctagatatggcagtttccaaacccaatt |
3748519 |
T |
|
| Q |
302 |
gggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcag |
395 |
Q |
| |
|
|| | ||||||||||| ||||||| ||| |||||||| | ||| ||||||| || ||| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
3748520 |
tggtactattccttgaatctggttatctgaaaggtctagttggatcaatgttgtatggtttatcaagaaactaggaaaagttttcaagttgcag |
3748613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 401
Target Start/End: Complemental strand, 5539986 - 5539836
Alignment:
| Q |
251 |
attgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaat |
350 |
Q |
| |
|
|||||| |||| |||||||| ||||||| |||||| || | ||||||||||||| |||| |||||||| |||||||| ||||||||| || | ||| |
|
|
| T |
5539986 |
attgtgagaaacattaaggttttgaagattttgtagcttccatatccagttgggcactgttccatgaatttgattatttgaaaggtctagaatgttcaat |
5539887 |
T |
|
| Q |
351 |
gttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
401 |
Q |
| |
|
| |||| ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
5539886 |
ctggatttgtttctcaagaaactagggaaagttttcaggttgcaggatgcc |
5539836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 401
Target Start/End: Complemental strand, 5572101 - 5571699
Alignment:
| Q |
5 |
tgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcggg |
104 |
Q |
| |
|
|||||||||||| ||||| | |||||| |||| |||||| ||||||| |||| ||| ||||| |||| |||||||||| ||||| ||||| || ||| |
|
|
| T |
5572101 |
tgaagcattgcagagggattgagggatagttccatgtaaagtattatttgaaaaagagagaaaagttgtgaaagacaggtagttaccgatatcttgtggg |
5572002 |
T |
|
| Q |
105 |
ataacagag---aatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtatt---ccttgaatgtggttgttatgaaggtcaatat |
198 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||| | | ||||| |||||||||| ||| |||| | ||||||||||||| ||||| |
|
|
| T |
5572001 |
ataacagaatcaaatttgttcattgagtaatccaaataagaagcaaattcaggaaaaacaggaattggaccttccaattggttgttatgaatgtcaaggg |
5571902 |
T |
|
| Q |
199 |
ataaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatcca |
298 |
Q |
| |
|
|| | |||||||| | |||||| || |||||||| || ||||| | ||| || |||| ||||||| ||||||| ||| | || ||||||| |
|
|
| T |
5571901 |
ctattaagttggaagtgaggttttgcagagggccttccaaatcagtgagcatattatgagaaacattaaggctttgaagattttgaatcctccaaatcca |
5571802 |
T |
|
| Q |
299 |
gttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggat |
398 |
Q |
| |
|
|||||| | ||||||||||| || |||| ||| ||||||||| || | ||| | |||| ||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
5571801 |
gttgggaactattccttgaatctgattatgtgagaggtctagaatgctcaatctggatttgtttctcaagaaactagggaaagttttcaggttgcaggat |
5571702 |
T |
|
| Q |
399 |
gcc |
401 |
Q |
| |
|
||| |
|
|
| T |
5571701 |
gcc |
5571699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 401
Target Start/End: Original strand, 5558473 - 5558640
Alignment:
| Q |
231 |
ccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttg |
330 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||| || | || |||| ||| |||||| ||||||| ||||||| | ||| |||||||||||| || |
|
|
| T |
5558473 |
ccttccaattcagtgagaaaattgtgagaaatattcagctgttcaaga-ctt--agtgtccaaatccaattgggcactactccgtgaatttggttagctg |
5558569 |
T |
|
| Q |
331 |
acaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
401 |
Q |
| |
|
| |||||||||| || ||| | ||||| || ||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
5558570 |
aaaggtctagatggaataacatggattggttcatcaagaaattagggaaagttttcaagttgcaggttgcc |
5558640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 5564112 - 5564194
Alignment:
| Q |
85 |
aattaccaatatcatgcgggataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtatt |
167 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||| | ||| |||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
5564112 |
aattaccaatatcttgtgggataacagaaaatttgttcattgagcaatccaaatattgaacatattcaagaaaagcaggtatt |
5564194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 401
Target Start/End: Complemental strand, 5584056 - 5583906
Alignment:
| Q |
251 |
attgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaat |
350 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||| | || ||||||||||||| | ||||||||||| || |||| ||| ||||||||| || | || |
|
|
| T |
5584056 |
attgtgagaaatattaaggctttgaagattttgaatcctccaaatccagttgggaactattccttgaatctgattatgtgagaggtctagaatgctaaaa |
5583957 |
T |
|
| Q |
351 |
gttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
401 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
5583956 |
caggattagtttctcaagaaactagggaaagttttcaggttgcaggatgcc |
5583906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 5558248 - 5558340
Alignment:
| Q |
15 |
caaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcgggata |
107 |
Q |
| |
|
||||||||||| ||||||||||| |||||| |||| | |||||||| ||||| | ||| |||||| |||||||||||||| || |||||| |
|
|
| T |
5558248 |
caaagggaatcggggatgcttccctgtaaattattttgtgaaagagagagaaaataagtggaagacaaataattaccaatatcttgtgggata |
5558340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 5584308 - 5584201
Alignment:
| Q |
5 |
tgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcggg |
104 |
Q |
| |
|
|||||||||||| ||||| |||||| |||| |||||| ||||||| |||| ||| ||||| |||| |||||||||| ||||| ||||| || ||| |
|
|
| T |
5584308 |
tgaagcattgcagagggatcgagggatagttccatgtaaagtattatttgaaaaagagagaaaagttgtgaaagacaggtagttaccgatatcttgtggg |
5584209 |
T |
|
| Q |
105 |
ataacaga |
112 |
Q |
| |
|
|||||||| |
|
|
| T |
5584208 |
ataacaga |
5584201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 5552444 - 5552577
Alignment:
| Q |
5 |
tgaagcattgcaaagggaatcagggatgcttccttgtaaactattattagaaagagatagaaactgtgtgtaagacaggtaattaccaatatcatgcggg |
104 |
Q |
| |
|
|||||||||||| ||| ||| ||||| |||||||||| ||| ||| || ||||| |||||| |||| |||||| ||||||||||||||| || || |
|
|
| T |
5552444 |
tgaagcattgcagagg-aatgagggaaacttccttgtactttatcatttgagagagagagaaacaatgtggaagacaagtaattaccaatatcttgtgga |
5552542 |
T |
|
| Q |
105 |
ataacagagaatttgttggtcgagtaatccaaata |
139 |
Q |
| |
|
||| ||| || ||||| || |||||||||||||| |
|
|
| T |
5552543 |
atactagaaaaattgtttgttgagtaatccaaata |
5552577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 1482686 - 1482796
Alignment:
| Q |
231 |
ccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttg |
330 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | |||| | || |||| || ||||||| || || || ||||||||||||||| | || |
|
|
| T |
1482686 |
ccttccaattctgtgagaaaattgtgtgaaatattaagttcctgaatactttctagtttccaaatccaattaggaagtgctccttgaatttggttctctg |
1482785 |
T |
|
| Q |
331 |
acaggtctaga |
341 |
Q |
| |
|
| ||||||||| |
|
|
| T |
1482786 |
aaaggtctaga |
1482796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University