View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_62 (Length: 422)
Name: NF20633_low_62
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 260 - 420
Target Start/End: Complemental strand, 48737085 - 48736925
Alignment:
| Q |
260 |
agtgcaatggctgtgtcgattaacgggagaagtttctgtacggattctaacaagattgatgagccctttaaagttgaagaagctgagactgtgcccccac |
359 |
Q |
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| T |
48737085 |
agtgcaatggctgtgtcgattaacgggagaagtttctgtacggattctaacaagattgatgagccctttaaagttgaagaagctgagactgtgcccccac |
48736986 |
T |
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| Q |
360 |
ctccaactgagaaggtactatcctacaatcatgcgtccatttttggatgttgttgttggtg |
420 |
Q |
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| T |
48736985 |
ctccaactgagaaggtactatcctacaatcatgcgtccatttttggatgttgttgttggtg |
48736925 |
T |
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Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 48737340 - 48737151
Alignment:
| Q |
11 |
atcatcaatcatctaatcaaatgaagacaatcatctcgcgcttgattcattcctcaccatcctccatttccagactcaagtttgttttttctcccttttt |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48737340 |
atcatccatcatctaatcaaatgaagacaatcatctcgcgcttgattcattcctcatcatcctccatttccagactcaagtttgttttttctcccttttt |
48737241 |
T |
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| Q |
111 |
aaatcatcattgcagttttttgttctatgatcgtatcgtttcaatatatgattgttagggt------taggttacacattctaagttata |
194 |
Q |
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| T |
48737240 |
aaatcatcattgcagttttttgttctatgatcgtatcgtttcaatatatgattgttagggttagggttaggttacacattctaagttata |
48737151 |
T |
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