View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_64 (Length: 416)
Name: NF20633_low_64
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 45300994 - 45301386
Alignment:
| Q |
17 |
caagatgtgcgtcaaaggacaaagaagcaaatacaatgtagcaaggttnnnnnnntagggcaataccacccttacatagtgttgaaacatatacaaagag |
116 |
Q |
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| T |
45300994 |
caagatgtgcgtcaaaggacaaataagcaaatacaatgtagcaaggttaaaaaaatagggcaataccaccattacatagtgttgaaacatatacaaagag |
45301093 |
T |
|
| Q |
117 |
atggattcgtccaccacaaataaaaatcaatgaattgagctgatttgtgagccttcaaccaccaccaagaatgaagtttgacatgctcgaacaattgctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
45301094 |
atggattcgtccaccacaaataaaaatcaatgaattgagctgatttgtgagccttcaaccaccaccaaaaatgaagtttgacacgctcgaacaattgctt |
45301193 |
T |
|
| Q |
217 |
agagaaaaatgtttattgttaaaagttcttgtatttctctctttttaaatataagcaaa--atacaaaccaactagatcgcctgaaaacaaccacgaatt |
314 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
45301194 |
agagaaaaatgtttattgttaaaagtttttgtatttctctctttttaaatataagcaaaatatacaaaccaactagatcgcctgaaaacaaccacggatt |
45301293 |
T |
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| Q |
315 |
tccttcctgaagacatgtgagccaccaaactgaagcgcgt--gaaccgataccgtcaggttgagcagtgtaaatcaccaccaaccaagaatta |
405 |
Q |
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| T |
45301294 |
tccttccttaagacatgtgagccaccaaactgaagcgcgtgagaaccgataccgtcaggttgagcagtgtaaatcaccaccaaccaagaatta |
45301386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 73 - 329
Target Start/End: Original strand, 32141353 - 32141601
Alignment:
| Q |
73 |
agggcaataccacccttacatagtgttgaaacatatacaaagagatggattcgtccaccacaaataaaaatcaatgaattgagctgatttgtgagccttc |
172 |
Q |
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| T |
32141353 |
agggcaataccaccatcacatagtgttgaaacatatacaaagagatggagtcgtccaccccgaatgaaaaacagtgaatttagttgatatgtgagccttc |
32141452 |
T |
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| Q |
173 |
aaccaccaccaagaatgaagtttgacatgctcgaacaattgct-tagagaaaaatgtttattgttaaaagttcttgtatttctctctttttaaatataag |
271 |
Q |
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|| ||||| |||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||| || ||| ||||||| || ||||| |
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| T |
32141453 |
aaacaccagcaagaatgaaacttgacacacgcgaacaattgctctagagaaaaatgtttattgttaaaattttttg-------ctcttttcaa--ataag |
32141543 |
T |
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| Q |
272 |
caaaatacaaaccaactagatcgcctgaaaacaaccacgaatttccttcctgaagaca |
329 |
Q |
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| T |
32141544 |
ccaaatgcaagccaactagatcgcctgaaaacaaccacaaatttccttcatgaagaca |
32141601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 74 - 387
Target Start/End: Complemental strand, 3557996 - 3557684
Alignment:
| Q |
74 |
gggcaataccacccttacatagtgttgaaacatatacaaagagatggattcgtccaccacaaataaaaatcaatgaattgagctgatttgtgagccttca |
173 |
Q |
| |
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|||||||||| || |||||||||||||||| ||||||| ||||| ||| ||||| ||| ||| ||||| || ||| |||||| ||||||||||||| |
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| T |
3557996 |
gggcaataccgccattacatagtgttgaaatcaatacaaatagatgaatttgtccatcacgaatgaaaattaacgaactgagctaggttgtgagccttca |
3557897 |
T |
|
| Q |
174 |
accaccaccaagaatgaagtttgacatgctcgaacaattgcttagagaaaaatgtttattgtt-aaaagttcttgtatttctctctttttaaatataagc |
272 |
Q |
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||||||| |||||||||| ||||||| || ||||||||||| |||||||||||||| |||| |||| |||||| ||||| |||||||||||| ||| |
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| T |
3557896 |
gccaccacaaagaatgaagcttgacatattcaaacaattgctt-gagaaaaatgtttactgttaaaaaattcttgcatttcgctctttttaaat---agc |
3557801 |
T |
|
| Q |
273 |
aaaatacaaaccaactagatcgcctgaaaacaaccacgaatttccttcctgaagacatgtgagccaccaaactgaagcgcgt--gaaccgataccgtcag |
370 |
Q |
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|||| ||| |||| |||| || ||||||||||| ||||| |||| |||||||||||||| ||||||||| || | ||| |||| ||| | ||| |
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| T |
3557800 |
caaatgcaagtcaaccagattatcttaaaacaaccacaaattttcttcatgaagacatgtgagtcaccaaacttaatcacgtgagaactaatatcaccag |
3557701 |
T |
|
| Q |
371 |
gttgagcagtgtaaatc |
387 |
Q |
| |
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||||||||||||||||| |
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| T |
3557700 |
gttgagcagtgtaaatc |
3557684 |
T |
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