View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_65 (Length: 414)
Name: NF20633_low_65
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 6 - 402
Target Start/End: Complemental strand, 2618137 - 2617741
Alignment:
| Q |
6 |
agtgctctcaggatattagttaaggaaacaagagaaaaaatatttgtattgaaaagagcgtttctaagacttttaaaaaccatgtgaatgactatataat |
105 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
2618137 |
agtgctttcaggatattagttaaagaaacaaaagaaaaaatatttgtattgaaaagagcgtttctatgacttttaaaaaccgtgtgaatgactatataat |
2618038 |
T |
|
| Q |
106 |
agatattatgtagtgttattcaacataatcaaagtctgacttagcgtgacttcgcattttcatccctatatagaataaaattgatataaagtaaaacaaa |
205 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2618037 |
atatattatgtagtgttattcaagataatcaaagtctgacttagcgtgacttcgcattttcatccctatatagaataaaattgatataaagtaaaataaa |
2617938 |
T |
|
| Q |
206 |
ttttaatttttataccttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2617937 |
ttttaatttttataccttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatca |
2617838 |
T |
|
| Q |
306 |
aagtatgctacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2617837 |
aagtatgctacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg |
2617741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 121 - 402
Target Start/End: Complemental strand, 2584239 - 2583956
Alignment:
| Q |
121 |
ttattcaacataatcaaagtctgacttagcgtgacttcgcattttcatccctatatagaat--aaaattgatataaagtaaaacaaattttaatttttat |
218 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||| |||||| ||||||||||||| || | || ||||| |
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|
| T |
2584239 |
ttattcaacataatcaaagtctggcttggcatgacttcgtgttttcatccctatatagaaataaaaatttatataaagtaaaaataaataaaaaatttat |
2584140 |
T |
|
| Q |
219 |
accttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctactt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2584139 |
accttttcactaagaacatcttgaattactaggatgtcgttagagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctactt |
2584040 |
T |
|
| Q |
319 |
cttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2584039 |
cttgtcttagaactgcttttaagtacctagctctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg |
2583956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 161 - 402
Target Start/End: Original strand, 2678834 - 2679076
Alignment:
| Q |
161 |
attttcatccctatatagaataaaa-ttgatataaagtaaaacaaattttaatttttataccttttcactaagaacatcttgaattactaggatgtcgtt |
259 |
Q |
| |
|
|||||||||| | |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
2678834 |
attttcatccttgtataaaataaaaattgatataaagtaaaacaaattttattttttataccttttcactaagaacatcttgaatcactaggctgtcgtt |
2678933 |
T |
|
| Q |
260 |
tgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttcttgtcttagaactgcttttaagtacctaactctcattctt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
2678934 |
agagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttcttgtcttagaactgcttttaagtatctagctctcattctt |
2679033 |
T |
|
| Q |
360 |
gcagcttgtctttcacctgttcttgtccaacaataaccctctg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2679034 |
gcagcttgtctttcacctgttcttgtccaacaataaccctctg |
2679076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 212 - 402
Target Start/End: Original strand, 2646485 - 2646675
Alignment:
| Q |
212 |
tttttataccttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtat |
311 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2646485 |
tttttataccttttcactaagaacgtcttgaattaccagactgtcgttagagacactggtgatgacttctgatgtgcttgtaatatgcaaatcaaagtat |
2646584 |
T |
|
| Q |
312 |
gctacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg |
402 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2646585 |
gatacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg |
2646675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 218 - 403
Target Start/End: Original strand, 2601713 - 2601898
Alignment:
| Q |
218 |
taccttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctact |
317 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||| | || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2601713 |
taccttttcgctaataacatcttgaattaccaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctact |
2601812 |
T |
|
| Q |
318 |
tcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctgt |
403 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2601813 |
tcttgtcttaaaactgcttttaagtacctaactctcattcttgcagcttgtctttcatctgttcttgtccaacaataaccctctgt |
2601898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 212 - 401
Target Start/End: Complemental strand, 2431420 - 2431231
Alignment:
| Q |
212 |
tttttataccttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtat |
311 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||| |||| | || ||||| |||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
2431420 |
ttttcataccttgtcactaagaacatcttgaattactaggctgtcactagatacactggtgatgacatctgttgtgcttgtaacatgcaaatcaaagtat |
2431321 |
T |
|
| Q |
312 |
gctacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctct |
401 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2431320 |
gatacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaatagccctct |
2431231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 218 - 402
Target Start/End: Original strand, 2574311 - 2574495
Alignment:
| Q |
218 |
taccttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctact |
317 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||| | || || |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
2574311 |
taccttttcgctaataacatcttgaattacgaggctatcattggagacactggtgatgacttctgatgtgcttgtaatatgcaaatcaaagtaagctaca |
2574410 |
T |
|
| Q |
318 |
tcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg |
402 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2574411 |
tcttgtcttagaattgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg |
2574495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 219 - 402
Target Start/End: Complemental strand, 2447489 - 2447306
Alignment:
| Q |
219 |
accttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctactt |
318 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| |||| | |||||| | ||||||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
2447489 |
accttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctactt |
2447390 |
T |
|
| Q |
319 |
cttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2447389 |
cttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctctcacctgttcttgtccaacaataaccctctg |
2447306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 2584959 - 2584882
Alignment:
| Q |
6 |
agtgctctcaggatattagttaaggaaacaagagaaaaaatatttgtattgaaaagagcgtttctaagacttttaaaa |
83 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||| | |||| ||||||||||||| ||||| |||||||||||| |
|
|
| T |
2584959 |
agtgctctcagggtactagttaaggaaacaaaagaaaacaaatttttattgaaaagagcatttcttagacttttaaaa |
2584882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 219 - 401
Target Start/End: Original strand, 17874976 - 17875158
Alignment:
| Q |
219 |
accttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctactt |
318 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||| || |||||||| ||||||| |||||| ||||||||||| ||||||||||| || || |||| |
|
|
| T |
17874976 |
accttctcactaagaacatcttgaattacaatagtgtcattagagacactagtgatgatttctgaggtgcttgtaacctgcaaatcaaaataagcaactt |
17875075 |
T |
|
| Q |
319 |
cttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctct |
401 |
Q |
| |
|
|||| || || ||||||||||||||| | |||||||||||||||||||||| ||| ||| |||||||||||||| |||||| |
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|
| T |
17875076 |
cttgcctaagtactgcttttaagtacttgtatctcattcttgcagcttgtcttccacttgtccttgtccaacaatatccctct |
17875158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 2321915 - 2321875
Alignment:
| Q |
20 |
attagttaaggaaacaagagaaaaaatatttgtattgaaaa |
60 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
2321915 |
attagttaaggaaacaaaagaagaaatatttgcattgaaaa |
2321875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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