View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_66 (Length: 411)

Name: NF20633_low_66
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_66
NF20633_low_66
[»] chr2 (7 HSPs)
chr2 (18-411)||(2350943-2351336)
chr2 (28-411)||(2303367-2303750)
chr2 (18-411)||(2326922-2327315)
chr2 (27-411)||(2330637-2331021)
chr2 (27-411)||(2321068-2321453)
chr2 (27-411)||(2293754-2294138)
chr2 (27-411)||(2310085-2310469)
[»] chr8 (3 HSPs)
chr8 (21-310)||(41127050-41127339)
chr8 (86-223)||(26506746-26506883)
chr8 (86-198)||(26494726-26494838)
[»] chr5 (1 HSPs)
chr5 (27-59)||(15176377-15176409)


Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 2351336 - 2350943
Alignment:
Q  18 ctaccaacaccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2351336 ctaccaacaccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcct 2351237  T
Q  118 cccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2351236 cccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgtcaccgc 2351137  T
Q  218 gtgtggtaacacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttcc 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2351136 gtgtggcaacacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttcc 2351037  T
Q  318 accttctctccatttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataa 411  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2351036 accttctctccatttccatcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataa 2350943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 28 - 411
Target Start/End: Complemental strand, 2303750 - 2303367
Alignment:
Q  28 caaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacacg 127  Q
    |||| ||||||||||||||||| |||||||| |||||||||||  | ||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  2303750 caaacggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaacctttctggcttaaactccattggatcctcccaaacacg 2303651  T
Q  128 aggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaac 227  Q
    |||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||| |||    
T  2303650 aggatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcgtgtggcaac 2303551  T
Q  228 acattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctc 327  Q
    | |  |||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||| |||||||||||||||||| |||||||||    
T  2303550 agaaaatgccccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctctttcacttcctccttctctc 2303451  T
Q  328 catttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataa 411  Q
    ||||  |||||  |||||||||||||| |||||| |||||||||||||  ||||| || |||||||| |||||||| |||||||    
T  2303450 cattctcatcaccacccatcacctcccgaatctcctccacaagcctcctctgcacttctgggtacttaaccaaattcgccataa 2303367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 2327315 - 2326922
Alignment:
Q  18 ctaccaacaccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcct 117  Q
    |||||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||    
T  2327315 ctaccagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcct 2327216  T
Q  118 cccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgc 217  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||| ||  |||| ||    
T  2327215 cccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcactgc 2327116  T
Q  218 gtgtggtaacacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttcc 317  Q
     || || ||||||  |||||| ||||||||||||||||||||||||||||||||||| |||| ||||  |||||| ||||| ||||||||||||||||||    
T  2327115 atgaggcaacacaaaatgccctggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcc 2327016  T
Q  318 accttctctccatttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataa 411  Q
     |||||||| ||   ||||||  |||||| | |||||||||||| | ||||||||||| ||| ||||| ||||||||||||||||| |||||||    
T  2327015 tccttctctacaacaccatcaccacccatgaactccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaccaaattcgccataa 2326922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 27 - 411
Target Start/End: Complemental strand, 2331021 - 2330637
Alignment:
Q  27 ccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacac 126  Q
    ||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  2331021 ccaaatggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacac 2330922  T
Q  127 gaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaa 226  Q
    |||| ||| ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||  |||| ||||| || ||    
T  2330921 gagggtccaaccccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtgaggcaa 2330822  T
Q  227 cacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctct 326  Q
    |||   |||||| |||||||||||||||||||||||||||||||| || |||| ||||  |||||| ||||| |||||||||||||||||| ||||||||    
T  2330821 cacgaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctct 2330722  T
Q  327 ccatttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataa 411  Q
    |||    ||||   ||||||||||||  ||||||| ||||||||| |||| || ||||| ||||||||||||||||| |||||||    
T  2330721 ccagcatcatcgccacccatcacctctgtaatctcctccacaagcttcccctgaacgtccgggtacttcaccaaattcgccataa 2330637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 27 - 411
Target Start/End: Complemental strand, 2321453 - 2321068
Alignment:
Q  27 ccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacac 126  Q
    ||||| ||||||||||||||||||||||||||  |||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2321453 ccaaacggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacac 2321354  T
Q  127 gaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaa 226  Q
    ||||||||||| ||||||| | || ||| ||||| ||||||||||||||||||||||||||||| || |||| |||||||||| |||||| |||||  ||    
T  2321353 gaggatcccacgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgtgtgtgccaa 2321254  T
Q  227 cacattatgcccc-ggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctc 325  Q
    ||||  ||||||| |||||||||||||||| ||||||||||||||| || |||| |||   |||||||||||| | |||||||||||||||| |||||||    
T  2321253 cacaaaatgcccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctctttcacttcctccttctc 2321154  T
Q  326 tccatttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataa 411  Q
    ||||||  |||||  | |||||||||| | |||||| |||||||||||||| ||||| || ||||||||||||||||| |||||||    
T  2321153 tccattgtcatcactaaccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataa 2321068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 27 - 411
Target Start/End: Complemental strand, 2294138 - 2293754
Alignment:
Q  27 ccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacac 126  Q
    ||||| ||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||| ||||||||||||||||  || |||||||||||||    
T  2294138 ccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaacgggtcctcccaaacac 2294039  T
Q  127 gaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaa 226  Q
    |||||||| || ||||||| |||| ||  ||||| |||||||| |||||||||||||||||||| |  |||| |||||||||| ||||||||||||| ||    
T  2294038 gaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaa 2293939  T
Q  227 cacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctct 326  Q
    |  |   | ||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||| |||||||||||||||||| ||||||||    
T  2293938 cggaaatttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcacttcctccttctct 2293839  T
Q  327 ccatttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataa 411  Q
    |||||| |||||  |||||||||||||| |||||| |||||||||||||| ||||| || ||||||||||| | ||| |||||||    
T  2293838 ccattttcatcaccacccatcacctcccgaatctcctccacaagcctcccctgcacttctgggtacttcactacattcgccataa 2293754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 27 - 411
Target Start/End: Complemental strand, 2310469 - 2310085
Alignment:
Q  27 ccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacac 126  Q
    ||||| ||||||||||||||||||||||| || | |||| |||| || ||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  2310469 ccaaacggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacac 2310370  T
Q  127 gaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaa 226  Q
    || ||||| || ||||||| ||||  |  ||||| |||||||| |||||||||||||||||||| |  |||| |||||||||| ||||||||||||| ||    
T  2310369 gacgatccaacgccatctccgccagaaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaa 2310270  T
Q  227 cacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctct 326  Q
    |  |   | ||||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||| ||||||||    
T  2310269 cggaaatttccccgatggatgacgcctcaacccttccaaaaccacacacttcaaataccaaagtttctgcaagtcttcctctttcacttcctccttctct 2310170  T
Q  327 ccatttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataa 411  Q
    |||||| |||||  |||||||||||||| |||||| |||||||||||||| | ||| || ||||||||||||| ||| |||||||    
T  2310169 ccattttcatcaccacccatcacctcccgaatctcctccacaagcctccccttcacttctgggtacttcaccacattcgccataa 2310085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 41127339 - 41127050
Alignment:
Q  21 ccaacaccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctccc 120  Q
    ||||| ||||| ||||||||||||||||||||| |||| ||||| ||||| |  ||||||||||||||||| ||||| |||||||||| |||||| ||||    
T  41127339 ccaactccaaacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttccc 41127240  T
Q  121 aaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtg 220  Q
    |||||| ||| |||| ||| || ||||||||||| ||||| ||   | |||||||||||| ||| ||||| |  |||| |||||||||  ||||||| ||    
T  41127239 aaacactagggtccctccctatgtctgccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctccttcaccgcatg 41127140  T
Q  221 tggtaacacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctcttt 310  Q
     || ||||||   ||||||||||| |||| ||||| ||||||||||| |||||| || |||||    || |||||||| |||||||||||    
T  41127139 gggcaacacaaagtgccccggtgggtgacacctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt 41127050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 26506883 - 26506746
Alignment:
Q  86 aaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaa 185  Q
    |||||| |||||||| ||  |||| ||||||||||||||||  ||||||||||| | |||||||||||||||||| || ||||||||||||||||||||     
T  26506883 aaacctatctggcttgaatgccatgggatcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaag 26506784  T
Q  186 taaccattaaaaagcacatcctctgtcaccgcgtgtgg 223  Q
    ||||| ||||||| ||||||||| ||||| || |||||    
T  26506783 taaccgttaaaaatcacatcctcggtcactgcatgtgg 26506746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 26494838 - 26494726
Alignment:
Q  86 aaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaa 185  Q
    ||||||||||||||||||| || | ||||||||||||||    |||||  | || || ||||||||||||||||| || ||||||||||||||||||||     
T  26494838 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatctaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 26494739  T
Q  186 taaccattaaaaa 198  Q
    |||||||| ||||    
T  26494738 taaccattcaaaa 26494726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 15176377 - 15176409
Alignment:
Q  27 ccaaatggcatcatctttatctctttactcccc 59  Q
    |||||||||||||||||||||||||||||||||    
T  15176377 ccaaatggcatcatctttatctctttactcccc 15176409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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