View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_74 (Length: 383)
Name: NF20633_low_74
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_74 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 53424425 - 53424791
Alignment:
| Q |
18 |
aaattaaattaaaaaactttaaaatgcataccttgttgaattgacatattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaatca |
117 |
Q |
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| T |
53424425 |
aaattaaattaaaaaactttaaaatgcataccttgttgaattgacatattggaggattgtggcagcatctcttgttcttaccacggttgctgggaagtca |
53424524 |
T |
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| Q |
118 |
taatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccat |
217 |
Q |
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| T |
53424525 |
taatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatccacccatctcttgcgccattttaatcttgtcatagattgtgtaaccat |
53424624 |
T |
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| Q |
218 |
catctatgccatcacatatgacaatctttcctttgactttgttcgtatctaatgaatttgggtgacacatcctgcatttaacaaacaataataa-nnnnn |
316 |
Q |
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| T |
53424625 |
catctatgccatcacatatgacaatctttcctttgactttgttcgtatctaatgaatttgggtgacacatcctgcatttaacaaacaataataatttttt |
53424724 |
T |
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| Q |
317 |
nngattaattatgcccagcaaacaagtttaagttaatttattgttatggttatgcatgcttacgtac |
383 |
Q |
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| T |
53424725 |
ttgattaattatgcccaacaaacaagtttaagttaattaattgttatggttatgcatgcttacgtac |
53424791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 53431594 - 53431843
Alignment:
| Q |
41 |
atgcataccttgttgaattgacatattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaatc---ataatttcttgcctctcctcc |
137 |
Q |
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| T |
53431594 |
atgcataccttgttgaattggcgtattggaggagtgtggcaacatcttttgatcttaccactgttgctgggaagtctccataactacgtatcatagctcc |
53431693 |
T |
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| Q |
138 |
ttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatc---tatgccatcacat |
234 |
Q |
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| T |
53431694 |
atcctggtcagtaatatgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaa |
53431793 |
T |
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| Q |
235 |
atgacaatctttcctttgactttgttcgtatctaatgaatttgggtgaca |
284 |
Q |
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| T |
53431794 |
atgacaatctttcctttgacttttttcttatttaatgaatttgggtgaca |
53431843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 48374134 - 48373873
Alignment:
| Q |
27 |
taaaaaactttaaaatgcataccttgttgaattgacatattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaat---cataattt |
123 |
Q |
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| T |
48374134 |
taaaaacctttaaaatgcttacctcgttgaattgacatatttgaggagtgtgacaacatcttttgatcttaccactgttgctgggaagtctgcataaata |
48374035 |
T |
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| Q |
124 |
cttgcctctcctccttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatcta |
223 |
Q |
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| T |
48374034 |
tttgccacagctccatcctggtcagtaatatgaacaagacctaatccacccgcctcttgcaccgtcctaattttttcatcggttgaataatcaccatcta |
48373935 |
T |
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| Q |
224 |
tgccatcacatatgacaatctttcctttgactttgttcgtatctaatgaatttgggtgacac |
285 |
Q |
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| T |
48373934 |
ccccatcgcagatgacaatatttccttcaacttttttcttatctaatgaacttggatgacac |
48373873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 26096526 - 26096577
Alignment:
| Q |
227 |
catcacatatgacaatctttcctttgactttgttcgtatctaatgaatttgg |
278 |
Q |
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| T |
26096526 |
catcacatatgacaatctttcctttgacttttttcttgtctaatgaacttgg |
26096577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 53308910 - 53308955
Alignment:
| Q |
31 |
aaactttaaaatgcataccttgttgaattgacatattggaggattg |
76 |
Q |
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| T |
53308910 |
aaactttataatgcttaccttgttgaattgacatattggagtattg |
53308955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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