View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_80 (Length: 368)
Name: NF20633_low_80
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 9569748 - 9569996
Alignment:
| Q |
20 |
gtatcgtcgctgatgcttatgtggttctgtttttggctcatccgggtctatttttctggtctgctgttgctgtttttctggtacgtggttactgtttggc |
119 |
Q |
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| T |
9569748 |
gtatcgtcgctgatgcttatgtggttctgtttt-ggctaatccaggtctgtttttctggtctgctgttgctgtctttctggtatgtggttactgtttggc |
9569846 |
T |
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| Q |
120 |
agtgggggttttggaagtttcttgggtcgatcccaccatttttctgtgcagcctccaggcttgttttttgcggcttccttgcggcctagcaaagttcact |
219 |
Q |
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| T |
9569847 |
agtgggggttctggaagtttcttcggtcgatcccaccgtttttctgggcagcctccaggcttgttttttgcggcttccttgtggcctggcaaagtttacc |
9569946 |
T |
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| Q |
220 |
gctgttgtgttttcttctgtttgattggtggatacagttagagtatttgc |
269 |
Q |
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| T |
9569947 |
gctgtcgtgttttcttctgtttgattggtggatacagttagagtatttgc |
9569996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 9606092 - 9605997
Alignment:
| Q |
83 |
ctgttgctgtttttctggtacgtggttactgtttggcagtgggggttttggaagtttcttgggtcgatcccaccatttttctgtgcagcctccagg |
178 |
Q |
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| T |
9606092 |
ctgttgctgcttttctggtctgtggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctgtgcagccttcagg |
9605997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 9593407 - 9593306
Alignment:
| Q |
106 |
ggttactgtttggcagtgggggttttggaagtttcttgggtcgatcccaccatttttctgtgcagcctccaggcttgttttttgcggcttccttgcggcc |
205 |
Q |
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| T |
9593407 |
ggttgctgtttggcagtgggggttctggaagtgtcttgagtctatcccaccgtttttatgtgcagctttcaggcttgttttgtgcggcttcctcgtggcc |
9593308 |
T |
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| Q |
206 |
ta |
207 |
Q |
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|| |
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| T |
9593307 |
ta |
9593306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 9581588 - 9581509
Alignment:
| Q |
131 |
tggaagtttcttgggtcgatcccaccatttttctgtgcagcctccaggcttgttttttgcggcttccttgcggcctagca |
210 |
Q |
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| T |
9581588 |
tggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtgtggcttccttgcggcctagca |
9581509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 9587283 - 9587204
Alignment:
| Q |
131 |
tggaagtttcttgggtcgatcccaccatttttctgtgcagcctccaggcttgttttttgcggcttccttgcggcctagca |
210 |
Q |
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| T |
9587283 |
tggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtgtggcttccttgcggcctagca |
9587204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 9581670 - 9581590
Alignment:
| Q |
20 |
gtatcgtcgctgatgcttatgtggttctgtttttggctcatccgggtctatttttctggtctgctgttg-ctgtttttctggt |
101 |
Q |
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| T |
9581670 |
gtatcgtcgctgatgattctgtggttctg-ttttggctcatctggtgct-gttttctggtctgctgttgcctgtttttctggt |
9581590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 9587365 - 9587285
Alignment:
| Q |
20 |
gtatcgtcgctgatgcttatgtggttctgtttttggctcatccgggtctatttttctggtctgctgttg-ctgtttttctggt |
101 |
Q |
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| T |
9587365 |
gtatcgtcgctgatgattctgtggttctg-ttttggctcatctggtgct-gttttctggtctgctgttgcctgtttttctggt |
9587285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 9602248 - 9602207
Alignment:
| Q |
20 |
gtatcgtcgctgatgcttatgtggttctgtttttggctcatc |
61 |
Q |
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| T |
9602248 |
gtatcgtcgctgatgcatatatggttttgtttttggctcatc |
9602207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 9606133 - 9606092
Alignment:
| Q |
20 |
gtatcgtcgctgatgcttatgtggttctgtttttggctcatc |
61 |
Q |
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| T |
9606133 |
gtatcgttgctgatgcttatgtccttctgtttttggctcatc |
9606092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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